Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:442890:459892 Pseudomonas mendocina ymp, complete genome

Start: 459892, End: 460230, Length: 339

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:3394174:341041034104103410769360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein7e-29125
NC_009439:442890:462006462006462365360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein7e-29125
NC_009439:442890:459333459333459692360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein7e-29125
NC_009439:1174432:118723911872391187598360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein7e-29125
NC_009439:1297851:131142713114271311786360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein7e-29125
NC_009439:20545:350523505235411360Pseudomonas mendocina ymp, complete genomeIS66 Orf2 family protein7e-29125
NC_002947:4604582:462751846275184627877360Pseudomonas putida KT2440, complete genomeISPpu15, transposase Orf14e-25113
NC_002947:5386489:540334154033415403700360Pseudomonas putida KT2440, complete genomeISPpu15, transposase Orf12e-24111
NC_015733:1555476:158428215842821584641360Pseudomonas putida S16 chromosome, complete genomeISPpu15, transposase Orf12e-24111
NC_015733:1179977:118873511887351189094360Pseudomonas putida S16 chromosome, complete genomeISPpu15, transposase Orf12e-24111
NC_010322:583842:595525595525595884360Pseudomonas putida GB-1 chromosome, complete genomeIS66 Orf2 family protein2e-24110
NC_010322:5349000:536226353622635362622360Pseudomonas putida GB-1 chromosome, complete genomeIS66 Orf2 family protein2e-24110
NC_002947:737924:746515746515746871357Pseudomonas putida KT2440, complete genomeISPpu15, transposase Orf18e-24108
NC_004578:4465247:447454344745434474902360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf11e-23108
NC_004578:212468:221520221520221855336Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-23107
NC_016830:1182765:119408111940811194440360Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein1e-23107
NC_016830:6589575:660267266026726603031360Pseudomonas fluorescens F113 chromosome, complete genomeISPsy5, Orf11e-23107
NC_004578:5336773:536773453677345368084351Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-23106
NC_004578:4499143:451061545106154510974360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:4061372:407123740712374071596360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:20738:467544675447113360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:3597083:360907236090723609431360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:895019:911777911777912136360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:212468:221125221125221484360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:2671508:268914626891462689505360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:3241618:324801532480153248374360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:6089958:610512461051246105483360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_002947:4484824:449525844952584495614357Pseudomonas putida KT2440, complete genomeISPpu13, transposase Orf18e-23105
NC_004578:4499143:451144745114474511806360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:4940000:495542549554254955784360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:1190000:121282012128201213179360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:6089958:610151361015136101872360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:6138669:614699261469926147351360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:5336773:540413654041365404495360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:5916711:593610059361005936459360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:5916711:593441959344195934778360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:3597083:361641336164133616772360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:4781326:479234947923494792708360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:5336773:536733253673325367691360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_004578:20738:565425654256901360Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPsy5, Orf17e-23105
NC_005773:4028500:403925440392544039592339Pseudomonas syringae pv. phaseolicola 1448A, complete genometransposase, truncated5e-2199.8
NC_004578:4432983:444216644421664442447282Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-2199
NC_017986:3407913:342873834287383429073336Pseudomonas putida ND6 chromosome, complete genomeISPpu13, transposase Orf11e-2098.2
NC_020209:1847895:185989518598951860098204Pseudomonas poae RE*1-1-14, complete genomeISPsy5, Orf14e-1683.2
NC_008576:3307297:332030233203023320661360Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein3e-1580.5
NC_008576:3331825:335254233525423352901360Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein3e-1580.5
NC_008576:357893:375510375510375869360Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein2e-1374.3
NC_008576:357893:372415372415372774360Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein2e-1374.3
NC_008576:777949:792653792653793012360Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein2e-1374.3
NC_008340:2034810:203836520383652038721357Alkalilimnicola ehrlichei MLHE-1, complete genomeIS66 Orf2 family protein5e-1373.2
NC_008340:1733735:174984017498401750196357Alkalilimnicola ehrlichei MLHE-1, complete genomeIS66 Orf2 family protein5e-1373.2
NC_008576:3307297:332609133260913326450360Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein6e-1372.8
NC_010995:4525119:452757945275794527929351Cellvibrio japonicus Ueda107, complete genomeIS66 family element, Orf2 protein2e-1271.2
NC_015850:217495:224256224256224636381Acidithiobacillus caldus SM-1 chromosome, complete genometransposase2e-1271.2
NC_015850:1850741:186335018633501863730381Acidithiobacillus caldus SM-1 chromosome, complete genometransposase2e-1271.2
NC_015850:1060000:106221210622121062592381Acidithiobacillus caldus SM-1 chromosome, complete genometransposase2e-1271.2
NC_015850:1614965:161644816164481616828381Acidithiobacillus caldus SM-1 chromosome, complete genometransposase2e-1271.2
NC_010995:404574:412440412440412790351Cellvibrio japonicus Ueda107, complete genomeIS66 family element, Orf2 protein4e-1166.6
NC_010995:1459831:147037014703701470720351Cellvibrio japonicus Ueda107, complete genomeIS66 family element, Orf2 protein4e-1166.6
NC_014366:3653190:366266836626683663024357Gamma proteobacterium HdN1, complete genomeputative transposase (IS66 family element, orf2-like)5e-1166.2
NC_014366:3653190:367111036711103671466357Gamma proteobacterium HdN1, complete genomeTransposase (IS66 family element, orf2-like)5e-1166.2
NC_011662:386162:415200415200415559360Thauera sp. MZ1T, complete genomeIS66 Orf2 family protein8e-1165.9
NC_011662:317831:317831317831318190360Thauera sp. MZ1T, complete genomeIS66 Orf2 family protein1e-1065.1
NC_018645:4277393:427944242794424279789348Desulfobacula toluolica Tol2, complete genometransposase, IS66 family Orf22e-1064.7
NC_015554:2355379:236663723666372366987351Alteromonas sp. SN2 chromosome, complete genomehypothetical protein3e-1063.9
NC_015942:1947258:196058019605801960930351Acidithiobacillus ferrivorans SS3 chromosome, complete genomeIS66 Orf2 family protein3e-1063.5
NC_008576:2458573:246592124659212466181261Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein4e-1063.2
NC_019940:3341794:334782533478253348127303Thioflavicoccus mobilis 8321 chromosome, complete genometransposase5e-1063.2
NC_018679:1858448:187107318710731871423351Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completehypothetical protein5e-1063.2
NC_008702:2230396:223280822328082233167360Azoarcus sp. BH72, complete genomeconserved hypothetical transposase helper protein5e-1063.2
NC_018679:3197347:320263832026383202988351Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completehypothetical protein5e-1062.8
NC_009784:1231791:123404012340401234393354Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein1e-0961.6
NC_009784:1591851:159709715970971597450354Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein1e-0961.6
NC_019940:1:105211052110883363Thioflavicoccus mobilis 8321 chromosome, complete genometransposase1e-0961.6
NC_015633:338000:338319338319338672354Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase2e-0961.2
NC_015637:819233:830002830002830355354Vibrio anguillarum 775 chromosome chromosome II, complete sequencetransposase2e-0961.2
NC_015633:2565753:258603225860322586385354Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase2e-0961.2
NC_015633:1702000:171814817181481718501354Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase2e-0961.2
NC_015633:1702000:172341917234191723772354Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase2e-0961.2
NC_015554:4266530:427088342708834271233351Alteromonas sp. SN2 chromosome, complete genomehypothetical protein2e-0960.8
NC_015633:2565753:257955825795582579878321Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase3e-0960.8
NC_019897:1577015:158699415869941587347354Thermobacillus composti KWC4 chromosome, complete genometransposase1e-0858.9
NC_006370:1810842:181725118172511817598348Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical protein1e-0858.9
NC_012108:4417483:444438944443894444742354Desulfobacterium autotrophicum HRM2, complete genometransposase (IS66 family protein)8e-0958.9
NC_012724:2547500:257916125791612579511351Burkholderia glumae BGR1 chromosome 1, complete genomeIS66 Orf2 family protein1e-0858.5
NC_012724:1308000:131850213185021318852351Burkholderia glumae BGR1 chromosome 1, complete genomeIS66 Orf2 family protein1e-0858.5
NC_012721:1986436:200177320017732002123351Burkholderia glumae BGR1 chromosome 2, complete genomeIS66 Orf2 family protein1e-0858.5
NC_012721:2556160:257271825727182573068351Burkholderia glumae BGR1 chromosome 2, complete genomeIS66 Orf2 family protein1e-0858.5
NC_009256:2907998:291148829114882911838351Burkholderia vietnamiensis G4 chromosome 1, complete sequenceIS66 Orf2 family protein1e-0858.5
NC_013892:1503162:151598115159811516334354Xenorhabdus bovienii SS-2004 chromosome, complete genometransposase1e-0858.5
NC_013892:274297:301807301807302160354Xenorhabdus bovienii SS-2004 chromosome, complete genometransposase1e-0858.5
NC_013892:753307:756850756850757203354Xenorhabdus bovienii SS-2004 chromosome, complete genometransposase1e-0858.5
NC_012108:4907430:491242449124244912777354Desulfobacterium autotrophicum HRM2, complete genometransposase1e-0858.5
NC_012108:4971086:501107250110725011338267Desulfobacterium autotrophicum HRM2, complete genometransposase1e-0858.5
NC_012108:4971086:501407850140785014365288Desulfobacterium autotrophicum HRM2, complete genometransposase2e-0858.2
NC_012797:1:184221842218775354Desulfovibrio magneticus RS-1 plasmid pDMC1, complete sequenceputative transposase orf2 for insertion sequence element2e-0857.8
NC_012797:1:626862686621354Desulfovibrio magneticus RS-1 plasmid pDMC1, complete sequenceputative transposase orf24e-0857
NC_011768:5631288:564574256457425646089348Desulfatibacillum alkenivorans AK-01, complete genomeIS66 Orf2 family protein5e-0856.2
NC_011768:5631288:564911356491135649460348Desulfatibacillum alkenivorans AK-01, complete genomeIS66 Orf2 family protein5e-0856.2
NC_011768:3385719:341032534103253410672348Desulfatibacillum alkenivorans AK-01, complete genomeIS66 Orf2 family protein5e-0856.2
NC_011768:5631288:564666656466665647013348Desulfatibacillum alkenivorans AK-01, complete genomeIS66 Orf2 family protein5e-0856.2
NC_012796:3374911:337962633796263379979354Desulfovibrio magneticus RS-1, complete genomeputative transposase orf2 for insertion sequence element6e-0856.2
NC_005773:4899252:490755249075524908361810Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy5, transposase truncated8e-0855.8
NC_009434:3611738:374374337437433743940198Pseudomonas stutzeri A1501, complete genomehypothetical protein2e-0754.7
NC_010529:296500:337920337920338270351Cupriavidus taiwanensis plasmid pRALTA, complete sequencetransposase, IS66 family2e-0754.3
NC_004578:5336773:536812053681205368296177Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0754.3
NC_013223:1090397:109784610978461098199354Desulfohalobium retbaense DSM 5692, complete genomeIS66 Orf2 family protein3e-0753.9
NC_013223:724394:769064769064769417354Desulfohalobium retbaense DSM 5692, complete genomeIS66 Orf2 family protein3e-0753.9
NC_009783:1665610:166734116673411667556216Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein3e-0753.9
NC_010002:3399770:341019734101973410547351Delftia acidovorans SPH-1, complete genomeIS66 Orf2 family protein3e-0753.9
NC_008576:777949:787776787776788078303Magnetococcus sp. MC-1, complete genomeIS66 Orf2 family protein3e-0753.5
NC_019897:329945:354654354654355007354Thermobacillus composti KWC4 chromosome, complete genometransposase4e-0753.5
NC_020126:8512908:852823385282338528622390Myxococcus stipitatus DSM 14675, complete genomeIS66 family transposase Orf15e-0753.1
NC_019904:5241444:524377952437795244120342Echinicola vietnamensis DSM 17526 chromosome, complete genometransposase5e-0753.1
NC_019904:5130458:513122551312255131566342Echinicola vietnamensis DSM 17526 chromosome, complete genometransposase5e-0753.1
NC_007435:191821:202482202482202832351Burkholderia pseudomallei 1710b chromosome II, complete sequenceyni6e-0752.8
NC_009434:695582:741838741838742182345Pseudomonas stutzeri A1501, complete genomeISPsy5, Orf17e-0752.8
NC_009434:695582:726688726688727032345Pseudomonas stutzeri A1501, complete genomeISPsy5, Orf17e-0752.8
NC_009434:695582:747400747400747744345Pseudomonas stutzeri A1501, complete genomeISPsy5, Orf17e-0752.8
NC_009434:3434381:345422734542273454571345Pseudomonas stutzeri A1501, complete genomeISPsy5, Orf17e-0752.8
NC_009434:3611738:365401536540153654359345Pseudomonas stutzeri A1501, complete genomeISPsy5, Orf17e-0752.8
NC_014623:4535544:453840945384094538750342Stigmatella aurantiaca DW4/3-1 chromosome, complete genometransposase, is66 orfb like protein9e-0752.4
NC_020126:1873794:188974618897461890135390Myxococcus stipitatus DSM 14675, complete genomeIS66 family transposase Orf19e-0752.4
NC_010676:2869936:287152628715262871876351Burkholderia phytofirmans PsJN chromosome 2, complete sequenceIS66 Orf2 family protein8e-0752.4
NC_020126:4622371:464123346412334641622390Myxococcus stipitatus DSM 14675, complete genomeIS66 family transposase Orf18e-0752.4
NC_009675:4281249:428769142876914288086396Anaeromyxobacter sp. Fw109-5 chromosome, complete genomeIS66 Orf2 family protein1e-0651.6
NC_008781:2655071:265718826571882657541354Polaromonas naphthalenivorans CJ2, complete genomeIS66 Orf2 family protein2e-0651.6
NC_010627:233572:238312238312238665354Burkholderia phymatum STM815 plasmid pBPHY02, complete sequenceIS66 Orf2 family protein2e-0651.2
NC_011138:1374520:137673613767361377071336Alteromonas macleodii 'Deep ecotype', complete genomeTransposase and inactivated derivative4e-0650.4
NC_017167:1088713:110497711049771105339363Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein3e-0650.4
NC_017167:2828500:283406428340642834426363Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein3e-0650.4
NC_017167:2828500:284047428404742840836363Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein3e-0650.4
NC_017167:351069:366858366858367220363Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein3e-0650.4
NC_015383:229036:231717231717232070354Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequenceIS66 Orf2 family protein3e-0650.4
NC_010623:1961685:199938419993841999737354Burkholderia phymatum STM815 chromosome 2, complete sequenceIS66 Orf2 family protein3e-0650.4
NC_010424:214640:234523234523234879357Candidatus Desulforudis audaxviator MP104C, complete genomeIS66 Orf2 family protein4e-0650.1
NC_010424:697187:736924736924737280357Candidatus Desulforudis audaxviator MP104C, complete genomeIS66 Orf2 family protein4e-0650.1
NC_017167:1648913:175543917554391755804366Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein4e-0650.1
NC_017167:1648913:177668517766851777050366Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein4e-0650.1
NC_012721:979656:985917985917986270354Burkholderia glumae BGR1 chromosome 2, complete genomeIS66 Orf2 like protein4e-0650.1
NC_012724:2547500:258050625805062580859354Burkholderia glumae BGR1 chromosome 1, complete genomeIS66 Orf2 like protein4e-0650.1
NC_018000:2816637:282134228213422821695354Sinorhizobium fredii USDA 257 chromosome, complete genomeIS66 Orf2 family protein6e-0649.7
NC_016627:1723104:173986317398631740216354Clostridium clariflavum DSM 19732 chromosome, complete genometransposase6e-0649.7
NC_016627:2664419:268136326813632681716354Clostridium clariflavum DSM 19732 chromosome, complete genometransposase6e-0649.7
NC_016627:3125169:313089731308973131250354Clostridium clariflavum DSM 19732 chromosome, complete genometransposase6e-0649.7
NC_010170:3944228:396936639693663969716351Bordetella petrii, complete genomehypothetical protein5e-0649.7
NC_016627:3125169:313987931398793140583705Clostridium clariflavum DSM 19732 chromosome, complete genometransposase5e-0649.7
NC_017167:1648913:175149617514961751858363Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein6e-0649.3
NC_017167:129988:155219155219155581363Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1IS66 Orf2 family protein6e-0649.3
NC_010625:1602191:1605016160501616060471032Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceintegrase family protein7e-0649.3
NC_016627:2664419:266959126695912669944354Clostridium clariflavum DSM 19732 chromosome, complete genometransposase9e-0648.9