Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:583842 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
583842584306465bacterioferritinQuickGO ontologyBLASTP
5843795872132835excinuclease ABC subunit AQuickGO ontologyBLASTP
5873435887371395major facilitator superfamily transporterQuickGO ontologyBLASTP
588747589292546single-stranded DNA-binding proteinQuickGO ontologyBLASTP
5894255907111287integrase family proteinQuickGO ontologyBLASTP
5907045922691566integrase family proteinQuickGO ontologyBLASTP
5922595943282070integrase family proteinQuickGO ontologyBLASTP
594321594785465hypothetical proteinBLASTP
594787595062276helix-turn-helix domain-containing proteinQuickGO ontologyBLASTP
595148595480333hypothetical proteinBLASTP
595525595884360IS66 Orf2 family proteinQuickGO ontologyBLASTP
5959125974321521transposase IS66QuickGO ontologyBLASTP
597636598109474hypothetical proteinBLASTP
598260599159900hypothetical proteinBLASTP
5992256005711347hypothetical proteinBLASTP
6009436020761134DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
6020856038061722hypothetical proteinBLASTP
603834604250417DNA mismatch endonuclease VsrQuickGO ontologyBLASTP
604310605011702hypothetical proteinBLASTP
6050996066491551hypothetical proteinBLASTP
607390607980591molybdopterin oxidoreductase Fe4S4 regionQuickGO ontologyBLASTP
6080296104582430formate dehydrogenase subunit alphaQuickGO ontologyBLASTP
610458611408951formate dehydrogenase subunit betaQuickGO ontologyBLASTP
611405612061657formate dehydrogenase subunit gammaQuickGO ontologyBLASTP
612066612986921formate dehydrogenase accessory protein FdhEQuickGO ontologyBLASTP
6130836145101428selenocysteine synthaseQuickGO ontologyBLASTP
6145076164291923selenocysteine-specific translation elongation factorQuickGO ontologyBLASTP
616556617554999asparaginaseQuickGO ontologyBLASTP
6176176190591443amino acid carrier proteinQuickGO ontologyBLASTP
619237620046810CroCI family transcriptional regulatorQuickGO ontologyBLASTP
620057620902846hypothetical protein