Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:20738 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
20738231432406helicaseSNF2 family domain proteinQuickGO ontologyBLASTP
2329024099810transposaseIS proteinQuickGO ontologyBLASTP
24096251181023ISPsy4 transposaseQuickGO ontologyBLASTP
2518725537351hypothetical proteinBLASTP
25556277962241hypothetical proteinBLASTP
2847829323846DNA-binding proteinQuickGO ontologyBLASTP
2932029919600hypothetical proteinBLASTP
3085030987138hypothetical protein
3133831967630hydrolase haloacid dehalogenase-like familyQuickGO ontologyBLASTP
32022330681047hypothetical proteinBLASTP
3325433976723hypothetical proteinBLASTP
33978359331956transposaseQuickGO ontologyBLASTP
3593336868936transposition helper proteinQuickGO ontologyBLASTP
36881387671887hypothetical proteinBLASTP
3934540082738SerThr protein phosphatase family proteinQuickGO ontologyBLASTP
4088441852969hypothetical proteinBLASTP
4185242757906ParB family proteinQuickGO ontologyBLASTP
42754443101557recombinase putativeQuickGO ontologyBLASTP
45183467361554ISPsy5 transposaseQuickGO ontologyBLASTP
4675447113360ISPsy5 Orf1QuickGO ontologyBLASTP
47448523584911helicase domain proteinQuickGO ontologyBLASTP
52403544932091hypothetical proteinBLASTP
54971565241554ISPsy5 transposaseQuickGO ontologyBLASTP
5654256901360ISPsy5 Orf1QuickGO ontologyBLASTP
5696157347387hypothetical protein
58344599061563cytidinedeoxycytidylate deaminase family proteinQuickGO ontologyBLASTP
60407614231017type III effector HopK1QuickGO ontologyBLASTP
6152661684159hypothetical protein
62078640631986hypothetical proteinBLASTP
64066659701905UvrDREP helicase family proteinQuickGO ontologyBLASTP
67445686111167hypothetical proteinBLASTP
6886369606744hypothetical proteinBLASTP