Pre_GI: BLASTP Hits

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Query: NC_004337:4374500:4389863 Shigella flexneri 2a str. 301, complete genome

Start: 4389863, End: 4390558, Length: 696

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002797:4603787:463433646343364635118783Escherichia coli NA114, complete genomeDeoxyribose operon repressor, DeoR family1e-133475
NC_017328:4417000:443230844323084433003696Shigella flexneri 2002017 chromosome, complete genomeputative transcriptional regulator2e-133474
NC_004741:4364235:438095943809594381654696Shigella flexneri 2a str. 2457T, complete genomeputative deoR family transcriptional regulator2e-133474
NC_008253:3122148:315165931516593152441783Escherichia coli 536, complete genomeputative regulatory protein, DeoR family3e-129460
NC_004431:279868:300643300643301428786Escherichia coli CFT073, complete genomePutative deoxyribose operon repressor7e-129459
NC_011745:333061:342954342954343739786Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator1e-128458
NC_008258:4345400:436062143606214361226606Shigella flexneri 5 str. 8401, complete genomeputative deoR family transcriptional regulator2e-114411
NC_016860:4055117:409994740999474100732786Salmonella enterica subsp. enterica serovar Typhimurium strDeoR family transcriptional regulator1e-108392
NC_020209:1949500:195292419529241953682759Pseudomonas poae RE*1-1-14, complete genomeregulatory protein, DeoR7e-36150
NC_012917:1923059:194419519441951944968774Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, DeoR family2e-35149
NC_013508:2356865:237825423782542379018765Edwardsiella tarda EIB202, complete genomeDNA-binding transcriptional repressor1e-34146
NC_012779:2424967:243867124386712439435765Edwardsiella ictaluri 93-146, complete genometranscriptional regulator, DeoR family5e-34144
NC_020064:1611820:161550616155061616270765Serratia marcescens FGI94, complete genometranscriptional regulator of sugar metabolism5e-32137
NC_012947:2898179:291573229157322916490759Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDeoR family transcriptional regulator1e-31136
NC_011601:846358:846358846358847116759Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding transcriptional repressor DeoR2e-31135
NC_011080:924326:941078941078941836759Salmonella enterica subsp. enterica serovar Newport str. SL254,deoxyribose operon repressor2e-30132
NC_011274:896802:913543913543914301759Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91DNA-binding transcriptional repressor DeoR2e-29129
NC_011094:973140:989874989874990632759Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding transcriptional repressor DeoR2e-29129
NC_011083:967260:984011984011984769759Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,deoxyribose operon transcriptional repressor2e-29129
NC_006905:946418:964491964491965249759Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for deoxyribose operon (DeoR family)2e-29129
NC_003197:920000:936744936744937502759Salmonella typhimurium LT2, complete genomedeoxyribose operon transcriptional repressor2e-29129
NC_010102:2178594:218081921808192181577759Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-29129
NC_011294:878896:895636895636896394759Salmonella enterica subsp. enterica serovar Enteritidis strDNA-binding transcriptional repressor DeoR2e-29129
NC_012125:894955:911695911695912453759Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor DeoR2e-29129
NC_016810:919266:936005936005936763759Salmonella enterica subsp. enterica serovar Typhimurium strdeoxyribose operon repressor2e-29129
NC_017046:919249:935987935987936745759Salmonella enterica subsp. enterica serovar Typhimurium str. 798deoxyribose operon repressor2e-29129
NC_016863:920346:937085937085937843759Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA-binding transcriptional repressor DeoR2e-29129
NC_016860:959609:976348976348977106759Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding transcriptional repressor DeoR2e-29129
NC_016857:919266:936005936005936763759Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA-binding transcriptional repressor DeoR2e-29129
NC_016856:921057:937796937796938554759Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA-binding transcriptional repressor DeoR2e-29129
NC_016831:2108557:211078221107822111540759Salmonella enterica subsp. enterica serovar Gallinarum/pullorumdeoxyribose operon repressor2e-29129
NC_011205:944125:960880960880961638759Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DNA-binding transcriptional repressor DeoR4e-29128
NC_016612:3361802:336303333630333363791759Klebsiella oxytoca KCTC 1686 chromosome, complete genomeDNA-binding transcriptional repressor DeoR3e-28125
NC_015690:1967244:202146520214652022274810Paenibacillus mucilaginosus KNP414 chromosome, complete genomeIolR3e-1789
NC_016935:2567039:257170325717032572503801Paenibacillus mucilaginosus 3016 chromosome, complete genomeprotein IolR5e-1787.8
NC_013766:417991:419929419929420690762Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-1685.9
NC_013768:418000:419950419950420711762Listeria monocytogenes 08-5923, complete genomehypothetical protein2e-1685.9
NC_003210:403743:405680405680406441762Listeria monocytogenes EGD-e, complete genomehypothetical protein3e-1685.1
NC_015152:2622000:262999326299932630760768Spirochaeta sp. Buddy chromosome, complete genomeDeoR family transcriptional regulator4e-1478.2
NC_007644:626992:633578633578634342765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, GntR family5e-1374.7
NC_013517:4208939:425901542590154259782768Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, DeoR family1e-1273.6
NC_016818:3986570:399906139990613999834774Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completesugar metabolism transcriptional regulator2e-1272.8
NC_017190:1196356:122881612288161229577762Bacillus amyloliquefaciens LL3 chromosome, complete genomeLactose phosphotransferase system represso3e-1272.4
NC_015425:2072703:209056420905642091328765Clostridium botulinum BKT015925 chromosome, complete genomeDeoR family transcriptional regulator5e-1271.2
NC_014335:3461115:347418234741823474934753Bacillus cereus biovar anthracis str. CI chromosome, completeDeoR family transcriptional regulator9e-1270.5
NC_011773:3547507:356112835611283561880753Bacillus cereus AH820 chromosome, complete genomeDeoR family transcriptional regulator1e-1170.1
NC_003909:3483244:349692334969233497675753Bacillus cereus ATCC 10987, complete genometranscriptional regulator, DeoR family1e-1170.1
NC_012581:709234:715920715920716672753Bacillus anthracis str. CDC 684 chromosome, complete genomeDeoR family transcriptional regulator1e-1169.7
NC_011852:211314:211314211314212075762Haemophilus parasuis SH0165, complete genometranscriptional repressor AgaR/DNA-binding transcriptional dual regulator4e-1168.6
NC_017047:3793000:380580038058003806567768Rahnella aquatilis HX2 chromosome, complete genomeDeoR family transcriptional regulator6e-1167.8
NC_003198:1378457:139833513983351399126792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein1e-1067
NC_009828:1474970:148010214801021480866765Thermotoga lettingae TMO, complete genometranscriptional regulator, DeoR family1e-1067
NC_014650:2500817:252729025272902528060771Geobacillus sp. Y4.1MC1 chromosome, complete genomeDeoR family transcriptional regulator3e-1065.9
NC_019897:1224798:123509812350981235850753Thermobacillus composti KWC4 chromosome, complete genomesugar metabolism transcriptional regulator2e-1065.9
NC_015061:3725921:374113937411393741921783Rahnella sp. Y9602 chromosome, complete genomeDeoR family transcriptional regulator3e-1065.5
NC_008309:1628939:163265316326531633405753Haemophilus somnus 129PT, complete genomeL-fucose operon activator3e-1065.5
NC_013757:2858327:286596528659652866741777Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, DeoR family5e-1064.7
NC_012947:3883484:390708239070823907864783Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDeoR family transcriptional regulator7e-1064.3
NC_016818:3736213:374858737485873749369783Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completesugar metabolism transcriptional regulator9e-1063.9
NC_014622:2477019:248831724883172489075759Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator yulb2e-0963.2
NC_013171:75110:928839288393632750Anaerococcus prevotii DSM 20548, complete genometranscriptional regulator, DeoR family2e-0963.2
NC_010067:1116148:112365811236581124410753Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0962.8
NC_008261:64678:942439424395013771Clostridium perfringens ATCC 13124, complete genomeputative transcriptional regulator IolR4e-0961.6
NC_020064:521500:525987525987526754768Serratia marcescens FGI94, complete genometranscriptional regulator of sugar metabolism4e-0961.6
NC_015565:128350:128350128350129108759Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDeoR family transcriptional regulator5e-0961.2
NC_020302:146807:148417148417149235819Corynebacterium halotolerans YIM 70093 = DSM 44683, completeDeoR family regulatory protein6e-0961.2
NC_019897:938921:944696944696945457762Thermobacillus composti KWC4 chromosome, complete genomesugar metabolism transcriptional regulator8e-0960.8
NC_015152:2622000:264059526405952641350756Spirochaeta sp. Buddy chromosome, complete genomeDeoR family transcriptional regulator1e-0860.5
NC_006155:3596120:362949136294913630267777Yersinia pseudotuberculosis IP 32953, complete genomeDeoR-family regulatory protein1e-0860.1
NC_010634:3509880:354325135432513544027777Yersinia pseudotuberculosis PB1/+, complete genomeDeoR family transcriptional regulator1e-0860.1
NC_016935:2567039:257856225785622579314753Paenibacillus mucilaginosus 3016 chromosome, complete genomeDeoR family transcriptional regulator1e-0860.1
NC_007644:3229:112471124712023777Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, DeoR family1e-0860.1
NC_012491:6143928:616040761604076161186780Brevibacillus brevis NBRC 100599, complete genomeputative transcriptional regulator1e-0860.1
NC_014624:2297000:231363923136392314403765Eubacterium limosum KIST612 chromosome, complete genomeDeoR-family transcriptional regulator1e-0859.7
NC_015690:1967244:202542520254252026177753Paenibacillus mucilaginosus KNP414 chromosome, complete genomeDeoR family transcriptional regulator2e-0859.7
NC_009648:1882500:188518218851821885955774Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeDeoR transcriptional regulator2e-0859.7
NC_012781:4065:178781787818621744Eubacterium rectale ATCC 33656, complete genometranscription repressor of fructose operon FruR2e-0859.3
NC_002505:514732:516560516560517342783Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator, DeoR family4e-0858.5
NC_017167:674511:692969692969693745777Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DeoR family transcriptional regulator4e-0858.5
NC_010001:1488000:150189815018981502671774Clostridium phytofermentans ISDg, complete genometranscriptional regulator, DeoR family4e-0858.5
NC_008253:2198583:221153222115322212305774Escherichia coli 536, complete genomegalactitol utilization operon repressor3e-0858.5
NC_012668:83641:102997102997103767771Vibrio cholerae MJ-1236 chromosome 1, complete sequencetranscriptional regulator of glmS gene DeoR family3e-0858.5
NC_016445:2938887:294072729407272941497771Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDeoR family transcriptional regulator3e-0858.5
NC_016944:514742:516582516582517352771Vibrio cholerae IEC224 chromosome I, complete sequenceDeoR family transcriptional regulator3e-0858.5
NC_004431:2444972:246099824609982461777780Escherichia coli CFT073, complete genomehypothetical protein3e-0858.5
NC_014618:1040381:106916810691681069941774Enterobacter cloacae SCF1 chromosome, complete genomeDeoR family transcriptional regulator5e-0858.2
NC_007644:711476:728286728286729086801Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, DeoR family5e-0858.2
NC_012967:2105251:212431621243162125089774Escherichia coli B str. REL606 chromosome, complete genomegalactitol utilization operon repressor4e-0858.2
NC_011283:2836000:283601228360122836773762Klebsiella pneumoniae 342 chromosome, complete genomeDeoR family transcriptional regulator4e-0858.2
NC_011283:2836000:285294028529402853701762Klebsiella pneumoniae 342 chromosome, complete genomeDeoR family transcriptional regulator4e-0858.2
NC_015565:2827444:284574028457402846534795Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDeoR family transcriptional regulator5e-0857.8
NC_013008:2824511:284027228402722841051780Escherichia coli O157:H7 str. TW14359 chromosome, complete genomegalactitol utilization operon repressor7e-0857.4
NC_011353:2825500:284129228412922842071780Escherichia coli O157:H7 str. EC4115 chromosome, complete genomegalactitol utilization operon repressor7e-0857.4
NC_013205:747502:759630759630760406777Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, DeoR family8e-0857.4
NC_010508:981377:100233010023301003085756Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetranscriptional regulator, DeoR family1e-0757
NC_008542:1021848:104907410490741049829756Burkholderia cenocepacia HI2424 chromosome 1, complete sequencetranscriptional regulator, DeoR family2e-0756.6
NC_008060:476861:504427504427505182756Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetranscriptional regulator, DeoR family2e-0756.6
NC_009801:3595001:361273336127333613542810Escherichia coli E24377A, complete genometranscriptional regulator, DeoR family2e-0756.2
NC_014023:24000:281992819928963765Bacillus megaterium QM B1551 plasmid pBM700, complete sequencetranscriptional regulator, DeoR family2e-0756.2
NC_009922:2721343:275046927504692751230762Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, DeoR family2e-0756.2
NC_016845:2655512:266078226607822661555774Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,DeoR transcriptional regulator2e-0755.8
NC_009801:3013838:303634830363483037115768Escherichia coli E24377A, complete genometranscriptional regulator, DeoR family3e-0755.8
NC_014650:2500817:251498525149852515743759Geobacillus sp. Y4.1MC1 chromosome, complete genomeDeoR family transcriptional regulator3e-0755.5
NC_014364:2562281:257484225748422575615774Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, DeoR family3e-0755.5
NC_009437:2579161:258397525839752584733759Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeDeoR family transcriptional regulator4e-0755.1
NC_011661:409943:410780410780411553774Dictyoglomus turgidum DSM 6724, complete genometranscriptional regulator, DeoR family4e-0755.1
NC_004193:375416:529625529625530398774Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator4e-0755.1
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome5e-0754.7
NC_013406:4000518:400411440041144004878765Paenibacillus sp. Y412MC10 chromosome, complete genomeDeoR family transcriptional regulator7e-0754.3
NC_009495:1368000:138681413868141387608795Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDeoR family transcriptional regulator7e-0754.3
NC_009697:1336889:135543413554341356228795Clostridium botulinum A str. ATCC 19397 chromosome, completeDeoR family transcriptional regulator7e-0754.3
NC_009698:1337383:135592813559281356722795Clostridium botulinum A str. Hall chromosome, complete genomeDeoR family transcriptional regulator7e-0754.3
NC_009053:1895485:191306019130601913806747Actinobacillus pleuropneumoniae L20, complete genomeL-fucose operon activator6e-0754.3
NC_004741:3240909:325951732595173260341825Shigella flexneri 2a str. 2457T, complete genomeputative DEOR-type transcriptional regulator of aga operon9e-0753.9
NC_004337:3249791:326839932683993269223825Shigella flexneri 2a str. 301, complete genomeputative DEOR-type transcriptional regulator of aga operon9e-0753.9
NC_017328:3289853:330846233084623309286825Shigella flexneri 2002017 chromosome, complete genomeputative DEOR-type transcriptional regulator of aga operon9e-0753.9
NC_009699:1400000:142046214204621421256795Clostridium botulinum F str. Langeland chromosome, complete genomeDeoR family transcriptional regulator8e-0753.9
NC_017297:1402349:142075514207551421549795Clostridium botulinum F str. 230613 chromosome, complete genomeDeoR family transcriptional regulator8e-0753.9
NC_010939:1920781:193900719390071939753747Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeL-fucose operon activator8e-0753.9
NC_012563:1464000:148461114846111485405795Clostridium botulinum A2 str. Kyoto, complete genometranscriptional regulator, DeoR family1e-0653.5
NC_011852:1482343:150337915033791504125747Haemophilus parasuis SH0165, complete genomeL-fucose operon activator2e-0653.1
NC_010516:1382000:140252514025251403319795Clostridium botulinum B1 str. Okra, complete genometranscriptional regulator, DeoR family2e-0653.1
NC_002695:3994970:401709140170914017900810Escherichia coli O157:H7 str. Sakai, complete genometranscriptional repressor of aga operon2e-0652.8
NC_011750:3768692:379070037907003791509810Escherichia coli IAI39 chromosome, complete genomeDNA-binding transcriptional regulator AgaR2e-0652.8
NC_000913:3256307:327587832758783276687810Escherichia coli K12, complete genomeDNA-binding transcriptional dual regulator2e-0652.8
NC_010498:3488513:350769235076923508501810Escherichia coli SMS-3-5, complete genomeDeoR family transcriptional regulator2e-0652.8
NC_011751:3710786:373279637327963733605810Escherichia coli UMN026 chromosome, complete genomeDNA-binding transcriptional regulator AgaR2e-0652.8
CP002185:3475991:349556034955603496369810Escherichia coli W, complete genomeDNA-binding transcriptional dual regulator2e-0652.8
NC_010473:3354052:337362333736233374432810Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding transcriptional dual regulator2e-0652.8
NC_013941:3884725:390673339067333907542810Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeaga operon transcriptional repressor2e-0652.8
NC_012967:3191319:321078432107843211593810Escherichia coli B str. REL606 chromosome, complete genomeDNA-binding transcriptional regulator AgaR2e-0652.8
NC_012759:3143455:316302631630263163835810Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional regulator AgaR2e-0652.8
NC_011415:3523364:354566035456603546469810Escherichia coli SE11 chromosome, complete genomeDNA-binding transcriptional regulator AgaR2e-0652.8
AC_000091:3258377:327771132777113278520810Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional dual regulator2e-0652.8
NC_008027:5842740:587022958702295871005777Pseudomonas entomophila L48, complete genometranscriptional repressor, DeoR family3e-0652.4
NC_014837:809911:832228832228832989762Pantoea sp. At-9b chromosome, complete genomeDeoR family transcriptional regulator6e-0651.2
NC_020063:2480983:250317425031742503923750Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator of sugar metabolism7e-0650.8
NC_014212:3091571:309801030980103098783774Meiothermus silvanus DSM 9946 chromosome, complete genometranscriptional regulator, DeoR family8e-0650.8