Pre_GI Gene

Some Help

Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:1923059 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
192305919247411683methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
19250681925730663GTP cyclohydrolase IQuickGO ontologyBLASTP
192586719270541188hypothetical proteinBLASTP
19270621927841780hypothetical proteinBLASTP
192802319293511329MiaB-like tRNA modifying enzyme YliGQuickGO ontologyBLASTP
192972019315521833ABC transporter relatedQuickGO ontologyBLASTP
193169419335021809glycosyl transferase family 8QuickGO ontologyBLASTP
193358519354321848glycosyl transferase family 8QuickGO ontologyBLASTP
193563419374661833glycosyl transferase family 8QuickGO ontologyBLASTP
193815319393191167glucose sorbosone dehydrogenaseQuickGO ontologyBLASTP
19393511939968618Glutathione S-transferase domain proteinQuickGO ontologyBLASTP
19401121940957846NLPA lipoproteinQuickGO ontologyBLASTP
194103919420551017ABC transporter relatedQuickGO ontologyBLASTP
19420481942707660binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
194299319441981206Beta-lactamaseQuickGO ontologyBLASTP
19441951944968774transcriptional regulator DeoR familyQuickGO ontologyBLASTP
19450001945668669deoxyribose-phosphate aldolaseQuickGO ontologyBLASTP
194600719476951689YidEYbjL duplicationQuickGO ontologyBLASTP