Pre_GI Gene

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Host: NC_012947 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012947:2898179 Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolation: Derivative of E. coli strain B; Temp: Mesophile; Temp: 37 C; Habitat: Host, Human intestinal microflora. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
28981792898607429regulatory proteinQuickGO ontologyBLASTP
28987442899496753capsid scaffoldingQuickGO ontologyBLASTP
289963929014051767hypothetical proteinBLASTP
290140529024301026phage portal protein PBSX familyQuickGO ontologyBLASTP
29024482903410963RNA-directed DNA polymeraseQuickGO ontologyBLASTP
29035732904496924hypothetical proteinBLASTP
29049692905304336hypothetical proteinBLASTP
29054972905730234DinI family proteinQuickGO ontologyBLASTP
29057412905929189hypothetical proteinBLASTP
290608229075271446regulatory CII family proteinQuickGO ontologyBLASTP
29075602907781222hypothetical proteinBLASTP
29079072908476570CI repressorQuickGO ontologyBLASTP
29084922908683192hypothetical proteinBLASTP
290887029098861017integraseQuickGO ontologyBLASTP
29099952910327333hypothetical proteinBLASTP
29105072911043537TetR family transcriptional regulatorQuickGO ontologyBLASTP
291112729123351209major facilitator superfamily MFS_1QuickGO ontologyBLASTP
29123352913150816Cof-like hydrolaseQuickGO ontologyBLASTP
29132422913520279hypothetical proteinBLASTP
291356129147931233major facilitator superfamily MFS_1QuickGO ontologyBLASTP
29150782915674597UDP pyrophosphate phosphataseQuickGO ontologyBLASTP
29157322916490759DeoR family transcriptional regulatorQuickGO ontologyBLASTP
291653729177391203D-alanyl-D-alanine carboxypeptidase fraction CQuickGO ontologyBLASTP
29179862918612627glutathione S-transferase domain proteinQuickGO ontologyBLASTP
291860929197241116glucose sorbosone dehydrogenaseQuickGO ontologyBLASTP