Pre_GI Gene

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Host: NC_012125 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012125:894955 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8949558964931539ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
896554897474921hypothetical proteinBLASTP
897477898388912hypothetical proteinBLASTP
8984798998041326ribosomal protein S12 methylthiotransferaseQuickGO ontologyBLASTP
899831899965135hypothetical proteinBLASTP
900035900418384biofilm formation regulatory protein BssRQuickGO ontologyBLASTP
901125901640516cytoplasmic proteinQuickGO ontologyBLASTP
901648902412765electron transfer flavoprotein beta subunitQuickGO ontologyBLASTP
902423903376954electron transfer flavoprotein subunit alphaQuickGO ontologyBLASTP
903409903606198hypothetical proteinBLASTP
9036709048331164acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
9054809069671488dehydrogenase flavoproteinQuickGO ontologyBLASTP
906973907863891transcriptional regulatorQuickGO ontologyBLASTP
909578910204627glutathione s-transferase family proteinQuickGO ontologyBLASTP
9104489116501203D-alanyl-D-alanine carboxypeptidase fraction CQuickGO ontologyBLASTP
911695912453759DNA-binding transcriptional repressor DeoRQuickGO ontologyBLASTP
912525913199675UDP pyrophosphate phosphataseQuickGO ontologyBLASTP
9134469146751230multidrug translocase MdfAQuickGO ontologyBLASTP
914729915544816hypothetical proteinBLASTP
9155419167521212hypothetical proteinBLASTP
916908917570663TetR family transcriptional regulatorQuickGO ontologyBLASTP
917587918513927bacteriophage integraseQuickGO ontologyBLASTP
918531918653123hypothetical protein
9187449205251782hypothetical proteinBLASTP
920537920893357repressor proteinQuickGO ontologyBLASTP
921486921989504hypothetical proteinBLASTP
921999922226228hypothetical proteinBLASTP
922350922583234hypothetical proteinBLASTP
922689923042354hypothetical proteinBLASTP
923110923340231hypothetical proteinBLASTP
923358924191834hypothetical proteinBLASTP
9241889262092022hypothetical proteinBLASTP
926343926540198hypothetical proteinBLASTP
926514926783270hypothetical proteinBLASTP
9268349278951062hypothetical proteinBLASTP
9278929296671776hypothetical proteinBLASTP
929675929788114hypothetical protein
929828930631804hypothetical proteinBLASTP
9306939317151023hypothetical proteinBLASTP
931719932420702hypothetical proteinBLASTP
932481932969489hypothetical proteinBLASTP
932966933472507hypothetical proteinBLASTP
9341739353001128hypothetical proteinBLASTP
935297935752456hypothetical proteinBLASTP
935762936055294hypothetical protein
936052936393342hypothetical proteinBLASTP
936393936725333hypothetical proteinBLASTP