Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012658: Clostridium botulinum Ba4 str. 657 chromosome, complete genome

NCBI: NC_012658

Host Lineage: Clostridium botulinum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium botulinum Ba4 str. 657 was isolated from an infant botulism case in 1976. The strain is a bivalent Ba strain, that simultaneously produces two different toxin types. This organism produces one of the most potent and deadly neurotoxins known, a botulinum toxin that prevents the release of acetylcholine at the neuromuscular junction, thereby inhibiting muscle contraction and causing paralysis. In most cases the diseased person dies of asphyxiation as a result of paralysis of chest muscles involved in breathing. The spores are heat-resistant and can survive in inadequately heated, prepared, or processed foods. Spores germinate under favorable conditions (anaerobiosis and substrate-rich environment) and bacteria start propagating very rapidly, producing the toxin.Botulinum toxin, and C. botulinum cells, has been found in a wide variety of foods, including canned ones. Almost any food that has a high pH (above 4.6) can support growth of the bacterium. Honey is the most common vehicle for infection in infants. Food poisoning through C. botulinum is the most frequent type of infection caused by this bacterium. The wound botulism that occurs when C. botulinum infects an individual via an open wound is much rarer and is very similar to tetanus disease. There are several types of botulinum toxin known (type A through type F), all of them being neurotoxic polypeptides. The most common and widely distributed are strains and serovars of C. botulinum that produce type A toxin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1940219402Island text6.3117922.671944.1617Neighbours21BLASTN1.gbk
235500*7859943100Island text7.021625.120545.4987Neighbours344BLASTN+35500.gbk
399899*11937419476Island text5.1943718.174432.9547Neighbours21BLASTN+99899.gbk
4125500*14759922100Island text4.6105619.44732.6221Neighbours21BLASTN125500.gbk
5482313*50728024968Island text4.6325521.248340.1621Neighbours21BLASTN+482313.gbk
654584056710421265Island text2.0313516.981633.3815Neighbours21BLASTN+545840.gbk
71052957107209519139Island text2.1836618.743923.9798Neighbours21BLASTN+1052957.gbk
81405788142449818711Island text5.3413217.655637.3675Neighbours21BLASTN+IslandViewer 1405788.gbk
91581486160458123096Island text2.4176916.810630.9843Neighbours21BLASTN1581486.gbk
101617902164124923348Island text3.8244216.424531.6177Neighbours21BLASTN+1617902.gbk
111658505168227223768Island text1.9136917.053734.9982Neighbours21BLASTN+1658505.gbk
121810640183488424245Island text5.5117418.456235.354Neighbours21BLASTN+IslandViewer 1810640.gbk
132138791216042521635Island text2.1579420.787630.5143Neighbours21BLASTN+IslandViewer 2138791.gbk
142295536231926223727Island text2.4710919.236431.2096Neighbours21BLASTN2295536.gbk
152393427241609922673Island text2.5217516.375932.8725Neighbours21BLASTN2393427.gbk
162498087251809920013Island text3.7810417.935.0027Neighbours21BLASTN+2498087.gbk
172525931254359917669Island text4.0528317.704936.893Neighbours21BLASTN+IslandViewer 2525931.gbk
182584355*262192737573Island text3.1734218.558935.796Neighbours21BLASTN2584355.gbk
192641446*268335041905Island text3.1215918.977234.1744Neighbours21BLASTN+2641446.gbk
202930244295375023507Island text3.8942817.964937.6088Neighbours21BLASTN2930244.gbk
213126108314687920772Island text2.4573918.428631.2655Neighbours21BLASTN3126108.gbk
223213498*323168818191Island text3.5292618.200835.3575Neighbours21BLASTN3213498.gbk
233387774*341194624173Island text2.7811717.783332.7141Neighbours21BLASTN3387774.gbk
243678000*370209924100Island text2.97525.1227.5564Neighbours21BLASTN+IslandViewer 3678000.gbk
253744000376333719338Island text2.8903818.487132.626Neighbours21BLASTN+3744000.gbk
263778822*381076931948Island text3.6997119.908536.5803Neighbours21BLASTN+3778822.gbk
273827500*385111023611Island text5.1657923.006944.0595Neighbours344BLASTN3827500.gbk
283923546*394698523440Island text2.6782219.158936.0608Neighbours21BLASTN3923546.gbk