Pre_GI: BLASTP Hits

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Query: NC_004603:1897532:1907308 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1907308, End: 1907679, Length: 372

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021066:1712905:172235817223581722735378Raoultella ornithinolytica B6, complete genomeendoribonuclease L-PSP5e-29126
NC_014306:4901390:491466449146644915041378Erwinia billingiae Eb661, complete genomeEndoribonuclease L-PSP1e-28125
NC_013956:4627890:464184746418474642272426Pantoea ananatis LMG 20103 chromosome, complete genomeYjgF3e-25114
NC_019978:1022209:102664010266401027026387Halobacteroides halobius DSM 5150, complete genomeendoribonuclease L-PSP, putative1e-1272
NC_012121:139741:149032149032149412381Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative purine regulatory protein1e-1271.6
NC_021066:3703725:371400037140003714386387Raoultella ornithinolytica B6, complete genomeendoribonuclease L-PSP4e-1270.1
NC_011297:1167615:117385711738571174234378Dictyoglomus thermophilum H-6-12, complete genomeendoribonuclease L-PSP1e-1168.9
NC_020272:3396800:342115334211533421530378Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein1e-1168.6
NC_014632:113420:126595126595126978384Ilyobacter polytropus DSM 2926 chromosome, complete genomeendoribonuclease L-PSP1e-1168.6
NC_011661:1332309:135425513542551354632378Dictyoglomus turgidum DSM 6724, complete genomeendoribonuclease L-PSP3e-1167
NC_017277:3083494:311081331108133111205393Synechocystis sp. PCC 6803, complete genomehypothetical protein1e-1064.7
NC_019974:3013338:302391930239193024308390Natronococcus occultus SP4, complete genomeendoribonuclease L-PSP, putative1e-1064.7
NC_013744:159861:178667178667179047381Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeendoribonuclease L-PSP2e-1064.3
NC_016025:807226:829399829399829797399Candidatus Chloracidobacterium thermophilum B chromosome chromosomeendoribonuclease L-PSP3e-1063.9
NC_015277:5211779:523113752311375231598462Sphingobacterium sp. 21 chromosome, complete genomeEndoribonuclease L-PSP5e-1063.2
NC_013766:906550:918309918309918686378Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein5e-1063.2
NC_003210:870587:882328882328882705378Listeria monocytogenes EGD-e, complete genomehypothetical protein5e-1063.2
NC_015589:7678:182061820618589384Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeendoribonuclease L-PSP6e-1062.8
NC_011757:1246000:127379612737961274182387Methylobacterium chloromethanicum CM4, complete genomeEndoribonuclease L-PSP9e-1062.4
NC_010674:615963:630362630362630736375Clostridium botulinum B str. Eklund 17B, complete genomeputative endoribonuclease L-PSP1e-0962
NC_014758:579741:586370586370586747378Calditerrivibrio nitroreducens DSM 19672 chromosome, completeendoribonuclease l-psp1e-0962
NC_010172:1199725:120944312094431209829387Methylobacterium extorquens PA1, complete genomeEndoribonuclease L-PSP1e-0961.6
NC_013385:90331:993919939199813423Ammonifex degensii KC4, complete genomeendoribonuclease L-PSP1e-0961.6
NC_014836:2919508:383238324212381Desulfurispirillum indicum S5 chromosome, complete genomeendoribonuclease L-PSP2e-0961.2
NC_014632:11925:310333103331416384Ilyobacter polytropus DSM 2926 chromosome, complete genomeendoribonuclease L-PSP2e-0961.2
NC_014364:2904443:290909329090932909467375Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeendoribonuclease L-PSP2e-0961.2
NC_016791:1980844:200449120044912004871381Clostridium sp. BNL1100 chromosome, complete genomeendoribonuclease L-PSP3e-0960.8
NC_018750:6869675:688702968870296887505477Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-0960.8
NC_004088:3923804:393208239320823932462381Yersinia pestis KIM, complete genomehypothetical protein3e-0960.5
NC_010634:4001154:401088840108884011268381Yersinia pseudotuberculosis PB1/+, complete genomeendoribonuclease L-PSP3e-0960.5
NC_003143:675622:688077688077688457381Yersinia pestis CO92, complete genomeputative translational inhibitor protein3e-0960.5
NC_008150:3495851:350498335049833505363381Yersinia pestis Antiqua, complete genomeputative translational inhibitor protein3e-0960.5
NC_010159:1071937:107785110778511078231381Yersinia pestis Angola, complete genomeputative endoribonuclease L-PSP3e-0960.5
NC_006155:4062000:407068240706824071062381Yersinia pseudotuberculosis IP 32953, complete genomeputative translational inhibitor protein3e-0960.5
NC_010465:660207:668352668352668732381Yersinia pseudotuberculosis YPIII, complete genomeendoribonuclease L-PSP3e-0960.5
NC_005810:3272765:328090632809063281286381Yersinia pestis biovar Microtus str. 91001, complete genomeputative translational inhibitor protein3e-0960.5
NC_017265:3790750:379744437974443797824381Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative translational inhibitor protein3e-0960.5
NC_017160:676249:685923685923686303381Yersinia pestis D182038 chromosome, complete genomeputative translational inhibitor protein3e-0960.5
NC_017154:671816:683738683738684118381Yersinia pestis D106004 chromosome, complete genomeputative translational inhibitor protein3e-0960.5
NC_014029:729675:741586741586741966381Yersinia pestis Z176003 chromosome, complete genomeputative translational inhibitor protein3e-0960.5
NC_009381:460358:470044470044470424381Yersinia pestis Pestoides F chromosome, complete genometranslational inhibitor protein3e-0960.5
NC_008149:587689:599607599607599987381Yersinia pestis Nepal516, complete genometranslational inhibitor protein3e-0960.5
NC_014328:4387303:438918143891814389555375Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative endoribonuclease L-PSP4e-0960.1
NC_010658:4494103:450877145087714509157387Shigella boydii CDC 3083-94, complete genomeputative endoribonuclease L-PSP4e-0960.1
AC_000091:4472000:447520744752074475593387Escherichia coli W3110 DNA, complete genomeketoacid-binding protein4e-0960.1
NC_010473:4564590:457035845703584570744387Escherichia coli str. K-12 substr. DH10B, complete genomeketoacid-binding protein4e-0960.1
NC_000913:4462782:446855044685504468936387Escherichia coli K12, complete genomeketoacid-binding protein4e-0960.1
NC_011742:4795733:479996147999614800347387Escherichia coli S88 chromosome, complete genomeketoacid-binding protein4e-0960.1
NC_012947:3947238:395991839599183960304387Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeendoribonuclease L-PSP4e-0960.1
NC_012967:4449576:445380444538044454190387Escherichia coli B str. REL606 chromosome, complete genomeketoacid-binding protein4e-0960.1
NC_009614:3714770:372855137285513728928378Bacteroides vulgatus ATCC 8482 chromosome, complete genomeendoribonuclease L-PSP4e-0960.1
NC_014023:24000:263062630626680375Bacillus megaterium QM B1551 plasmid pBM700, complete sequenceEndoribonuclease L-PSP6e-0959.7
NC_007613:4217557:425144742514474251872426Shigella boydii Sb227, complete genomehypothetical protein6e-0959.7
NC_012489:1874415:187402618740261874418393Gemmatimonas aurantiaca T-27, complete genomeputative endoribonuclease5e-0959.7
NC_010498:4821519:482574748257474826172426Escherichia coli SMS-3-5, complete genomeputative endoribonuclease L-PSP5e-0959.7
NC_009708:633054:641199641199641579381Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeendoribonuclease L-PSP8e-0959.3
NC_010723:575254:594070594070594447378Clostridium botulinum E3 str. Alaska E43, complete genomeputative endoribonuclease L-PSP9e-0958.9
NC_015873:1411718:141171814117181412104387Megasphaera elsdenii DSM 20460, complete genomeputative endoribonuclease L-PSP1e-0858.5
NC_006322:2658587:267064426706442671027384Bacillus licheniformis ATCC 14580, complete genomehypothetical protein1e-0858.5
NC_006270:2657726:266978326697832670157375Bacillus licheniformis ATCC 14580, complete genomeputative Endoribonuclease L-PSP1e-0858.5
NC_006270:2657726:266717526671752667564390Bacillus licheniformis ATCC 14580, complete genomeputative translation initiation inhibitor2e-0858.2
NC_006322:2658587:266803626680362668425390Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-0858.2
NC_020063:4170464:418221241822124182598387Enterobacteriaceae bacterium strain FGI 57, complete genomeendoribonuclease L-PSP, putative2e-0857.8
NC_014366:354000:370852370852371235384Gamma proteobacterium HdN1, complete genomePutative translation initiation inhibitor, yjgF family2e-0857.4
NC_015144:1526669:153075515307551531147393Weeksella virosa DSM 16922 chromosome, complete genomeendoribonuclease L-PSP3e-0857.4
NC_007576:435713:457772457772458158387Lactobacillus sakei subsp. sakei 23K, complete genomePutative single-stranded mRNA endoribonuclease3e-0857.4
NC_016047:2631511:264086726408672641241375Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranslation initiation inhibitor3e-0857.4
NC_009802:1827138:184306818430681843502435Campylobacter concisus 13826, complete genomeputative endoribonuclease L-PSP3e-0857.4
NC_010645:1341475:136079613607961361197402Bordetella avium 197N, complete genomeendoribonuclease6e-0856.2
NC_016609:7608723:763228376322837632669387Niastella koreensis GR20-10 chromosome, complete genomeendoribonuclease L-PSP8e-0855.8
NC_014640:2693060:270855427085542708949396Achromobacter xylosoxidans A8 chromosome, complete genomeendoribonuclease L-PSP family protein1e-0755.5
NC_016935:1365463:139792113979211398301381Paenibacillus mucilaginosus 3016 chromosome, complete genomeendoribonuclease L-PSP1e-0755.1
NC_011751:3710786:371516737151673715556390Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-0755.1
NC_009800:3307123:330855933085593308948390Escherichia coli HS, complete genomeputative endoribonuclease L-PSP2e-0754.7
NC_010658:3014371:302702430270243027413390Shigella boydii CDC 3083-94, complete genomeputative endoribonuclease L-PSP2e-0754.7
NC_011748:3608917:361329736132973613686390Escherichia coli 55989, complete genomehypothetical protein2e-0754.7
NC_011750:3768692:377307237730723773461390Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-0754.7
CU928160:3344746:334618233461823346571390Escherichia coli IAI1 chromosome, complete genomeL-PSP (mRNA) endoribonuclease2e-0754.7
NC_004337:3249791:325122732512273251616390Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-0754.7
CP002516:613462:628259628259628648390Escherichia coli KO11, complete genomeendoribonuclease L-PSP2e-0754.7
CP002185:3475991:347742534774253477814390Escherichia coli W, complete genomepredicted L-PSP (mRNA) endoribonuclease2e-0754.7
CU928145:3608917:361329736132973613686390Escherichia coli 55989 chromosome, complete genomeL-PSP (mRNA) endoribonuclease2e-0754.7
NC_013941:3884725:388910538891053889557453Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTdcF protein2e-0754.7
NC_017328:3289853:329128932912893291741453Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-0754.7
NC_007613:2981829:298182929818292982281453Shigella boydii Sb227, complete genomehypothetical protein2e-0754.7
NC_008258:3224721:322615732261573226609453Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-0754.7
AC_000091:3258377:325837732583773258766390Escherichia coli W3110 DNA, complete genomepredicted L-PSP (mRNA) endoribonuclease2e-0754.7
NC_000913:3256307:325774332577433258132390Escherichia coli K12, complete genomepredicted L-PSP (mRNA) endoribonuclease2e-0754.7
NC_013501:931418:931418931418931816399Rhodothermus marinus DSM 4252, complete genomeendoribonuclease L-PSP2e-0754.7
NC_015966:2337833:235673623567362357134399Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeendoribonuclease L-PSP2e-0754.7
NC_016902:613462:628259628259628648390Escherichia coli KO11FL chromosome, complete genomeendoribonuclease L-PSP2e-0754.7
NC_012967:3191319:319275531927553193144390Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-0754.7
NC_012947:630757:647395647395647784390Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-0754.7
NC_012759:3143455:314489131448913145280390Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-0754.7
NC_011741:3344746:334618233461823346571390Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-0754.7
NC_011415:3523364:352774435277443528133390Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-0754.7
NC_004741:3240909:324234532423453242734390Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-0754.7
NC_002695:3994970:399935039993503999739390Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0754.7
NC_010498:3488513:348994934899493490338390Escherichia coli SMS-3-5, complete genomeputative endoribonuclease L-PSP2e-0754.7
NC_010473:3354052:335548833554883355877390Escherichia coli str. K-12 substr. DH10B, complete genomepredicted L-PSP (mRNA) endoribonuclease2e-0754.7
NC_010468:613812:630450630450630839390Escherichia coli ATCC 8739, complete genomeendoribonuclease L-PSP2e-0754.7
NC_013515:1125739:114379311437931144158366Streptobacillus moniliformis DSM 12112, complete genomeendoribonuclease L-PSP2e-0754.3
NC_010645:1341475:136041313604131360799387Bordetella avium 197N, complete genomeendoribonuclease2e-0754.3
NC_011979:2352961:238206923820692382455387Geobacter sp. FRC-32, complete genomeendoribonuclease L-PSP2e-0754.3
NC_006351:2759708:279335527933552793765411Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein3e-0753.9
NC_010465:660207:669017669017669421405Yersinia pseudotuberculosis YPIII, complete genomeEndoribonuclease L-PSP3e-0753.9
NC_008149:587689:600272600272600676405Yersinia pestis Nepal516, complete genometranslational inhibitor protein3e-0753.9
NC_010634:4001154:401019940101994010603405Yersinia pseudotuberculosis PB1/+, complete genomeendoribonuclease L-PSP3e-0753.9
NC_008150:3495851:350429435042943504698405Yersinia pestis Antiqua, complete genomeputative translational inhibitor protein3e-0753.9
NC_010159:1071937:107716210771621077566405Yersinia pestis Angola, complete genomeendoribonuclease, L-PSP family3e-0753.9
NC_006155:4062000:406999340699934070397405Yersinia pseudotuberculosis IP 32953, complete genomeputative translational inhibitor protein3e-0753.9
NC_004088:3923804:393139339313933931797405Yersinia pestis KIM, complete genomehypothetical protein3e-0753.9
NC_005810:3272765:328157132815713281975405Yersinia pestis biovar Microtus str. 91001, complete genomeputative translational inhibitor protein3e-0753.9
NC_003143:675622:688742688742689146405Yersinia pestis CO92, complete genomeputative translational inhibitor protein3e-0753.9
NC_009381:460358:470709470709471113405Yersinia pestis Pestoides F chromosome, complete genometranslational inhibitor protein3e-0753.9
NC_009708:633054:641864641864642268405Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeL-PSP family endoribonuclease3e-0753.9
NC_014029:729675:742251742251742655405Yersinia pestis Z176003 chromosome, complete genomeputative translational inhibitor protein3e-0753.9
NC_017154:671816:684403684403684807405Yersinia pestis D106004 chromosome, complete genomeputative translational inhibitor protein3e-0753.9
NC_017160:676249:686588686588686992405Yersinia pestis D182038 chromosome, complete genomeputative translational inhibitor protein3e-0753.9
NC_017265:3790750:379675537967553797159405Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative translational inhibitor protein3e-0753.9
NC_012982:2415237:243796724379672438374408Hirschia baltica ATCC 49814, complete genomeEndoribonuclease L-PSP3e-0753.5
NC_010645:558974:577112577112577549438Bordetella avium 197N, complete genome2-aminomuconate deaminase6e-0752.8
NC_015690:3941113:397856539785653978864300Paenibacillus mucilaginosus KNP414 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_014618:586240:610365610365610754390Enterobacter cloacae SCF1 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_015727:1076927:108296410829641083347384Cupriavidus necator N-1 plasmid BB1p, complete sequenceendoribonuclease L-PSP family protein 61e-0652
NC_007335:1820332:183710018371001837507408Prochlorococcus marinus str. NATL2A, complete genomeYjgF-like protein1e-0652
NC_021184:2936244:294392429439242944325402Desulfotomaculum gibsoniae DSM 7213, complete genomeputative translation initiation inhibitor, yjgF family2e-0651.6
NC_010170:2374852:237607623760762376462387Bordetella petrii, complete genomeputative translational inhibitor1e-0651.6
NC_008819:541000:556964556964557371408Prochlorococcus marinus str. NATL1A, complete genomePutative translation initiation inhibitor, yjgF family1e-0651.6
NC_015276:1531159:153304715330471533430384Marinomonas mediterranea MMB-1 chromosome, complete genomepyrimidine utilization protein C1e-0651.6
NC_013202:771161:807690807690808067378Halomicrobium mukohataei DSM 12286, complete genomeendoribonuclease L-PSP1e-0651.6
NC_003296:1665569:167318916731891673566378Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-0651.6
NC_003296:1696958:170337917033791703756378Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completehypothetical protein1e-0651.6
NC_015666:1293500:129843212984321298812381Halopiger xanaduensis SH-6 chromosome, complete genomeendoribonuclease L-PSP2e-0650.8
NC_010556:316996:321607321607321996390Exiguobacterium sibiricum 255-15, complete genomeendoribonuclease L-PSP3e-0650.4
NC_007907:2306561:231690823169082317294387Desulfitobacterium hafniense Y51, complete genomehypothetical protein6e-0649.7
NC_017361:930280:930280930280930657378Helicobacter pylori SouthAfrica7 chromosome, complete genometranslation initiation inhibitor5e-0649.7
NC_002528:404545:408889408889409275387Buchnera aphidicola str. APS (Acyrthosiphon pisum), completehypothetical protein7e-0649.3
NC_007577:503440:520657520657521049393Prochlorococcus marinus str. MIT 9312, complete genomeYjgF-like protein7e-0649.3
NC_020291:795500:798015798015798389375Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeRutC family protein9e-0648.9