Pre_GI: OUP Neighbours

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Query: NC_012984:520000 Lactobacillus plantarum JDM1, complete genome

D: 29.4929

Host Lineage: Lactobacillus plantarum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain is a Chinese commercial lactic acid bacterium with several probiotic functions. Lactobacillus plantarum are commonly isolated from plant material, and the gastrointestinal tract of animals. This organism is used in the production of fermented foods such as saurkraut, kimchi and sourdough bread. This organism is also of interest as a probiotic to maintain and regulate the human intestinal microflora.

Number of Neighbours: 111




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015759:667505Weissella koreensis KACC 15510 chromosome, complete genome76.4216 %Subject → Query18.218
NC_002662:1042546Lactococcus lactis subsp. lactis Il1403, complete genome76.0263 %Subject → Query18.3822
NC_009782:2091815Staphylococcus aureus subsp. aureus Mu3, complete genome77.1691 %Subject → Query18.7627
NC_013656:1071667Lactococcus lactis subsp. lactis KF147, complete genome75.3768 %Subject → Query19.1695
NC_007795:2034000Staphylococcus aureus subsp. aureus NCTC 8325, complete genome75.0521 %Subject → Query19.237
NC_002953:2032278Staphylococcus aureus subsp. aureus MSSA476, complete genome77.0343 %Subject → Query19.3185
NC_003923:2053510Staphylococcus aureus subsp. aureus MW2, complete genome77.2549 %Subject → Query19.3438
NC_002745:2018761Staphylococcus aureus subsp. aureus N315, complete genome76.9914 %Subject ←→ Query19.5161
NC_015391:1551959Carnobacterium sp. 17-4 chromosome, complete genome75.4626 %Subject ←→ Query19.5647
NC_014136:1879049Leuconostoc kimchii IMSNU11154 chromosome, complete genome76.4246 %Subject ←→ Query19.7228
NC_016011:678419Listeria ivanovii subsp. ivanovii PAM 55, complete genome79.0625 %Subject ←→ Query19.8549
NC_008555:1204000Listeria welshimeri serovar 6b str. SLCC5334, complete genome75.1164 %Subject ←→ Query20.1406
NC_008530:646207*Lactobacillus gasseri ATCC 33323, complete genome75.5668 %Subject ←→ Query20.1544
NC_009782:920272Staphylococcus aureus subsp. aureus Mu3, complete genome75.1991 %Subject ←→ Query20.2112
NC_014136:329484Leuconostoc kimchii IMSNU11154 chromosome, complete genome80.9161 %Subject ←→ Query20.2253
NC_008555:696217Listeria welshimeri serovar 6b str. SLCC5334, complete genome76.492 %Subject ←→ Query20.5557
NC_015391:2059191*Carnobacterium sp. 17-4 chromosome, complete genome75.6311 %Subject ←→ Query20.7322
NC_015978:1266196*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete77.5919 %Subject ←→ Query20.8603
NC_015391:2488450Carnobacterium sp. 17-4 chromosome, complete genome75.9896 %Subject ←→ Query21.1758
NC_003212:2592600Listeria innocua Clip11262, complete genome75.095 %Subject ←→ Query21.3369
NC_008555:400352Listeria welshimeri serovar 6b str. SLCC5334, complete genome75.2328 %Subject ←→ Query21.4286
NC_002973:72328*Listeria monocytogenes str. 4b F2365, complete genome75.9406 %Subject ←→ Query21.6136
NC_003210:2380419Listeria monocytogenes EGD-e, complete genome76.4951 %Subject ←→ Query21.644
NC_007432:548964*Streptococcus agalactiae A909, complete genome75.2083 %Subject ←→ Query21.6937
NC_003212:2413824*Listeria innocua Clip11262, complete genome75.7567 %Subject ←→ Query21.9155
NC_014925:607843Staphylococcus pseudintermedius HKU10-03 chromosome, complete76.008 %Subject ←→ Query21.9388
NC_013891:575746Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome77.3652 %Subject ←→ Query21.9659
NC_009513:870837Lactobacillus reuteri F275, complete genome77.1446 %Subject ←→ Query22.0209
NC_003210:403743Listeria monocytogenes EGD-e, complete genome75.3952 %Subject ←→ Query22.1607
NC_003210:2879906*Listeria monocytogenes EGD-e, complete genome76.7402 %Subject ←→ Query22.1972
NC_015428:21724Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.0876 %Subject ←→ Query22.2854
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome75.576 %Subject ←→ Query22.3067
NC_003212:1713958Listeria innocua Clip11262, complete genome76.6483 %Subject ←→ Query22.5827
NC_012121:474144Staphylococcus carnosus subsp. carnosus TM300, complete genome75.0521 %Subject ←→ Query22.6555
NC_003212:57061*Listeria innocua Clip11262, complete genome76.1979 %Subject ←→ Query22.7906
NC_008525:606986Pediococcus pentosaceus ATCC 25745, complete genome75.8487 %Subject ←→ Query22.793
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome76.489 %Subject ←→ Query22.793
NC_003212:2293425Listeria innocua Clip11262, complete genome77.1446 %Subject ←→ Query22.8265
NC_008525:1013979Pediococcus pentosaceus ATCC 25745, complete genome75.9804 %Subject ←→ Query22.945
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome78.8266 %Subject ←→ Query23.2612
NC_015978:412856*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete76.0876 %Subject ←→ Query23.2933
NC_014925:1314570Staphylococcus pseudintermedius HKU10-03 chromosome, complete75.5545 %Subject ←→ Query23.3433
NC_003485:1061344Streptococcus pyogenes MGAS8232, complete genome76.6268 %Subject ←→ Query23.6625
NC_013891:640784*Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome77.0221 %Subject ←→ Query23.8704
NC_008525:780500Pediococcus pentosaceus ATCC 25745, complete genome77.9657 %Subject ←→ Query24.0776
NC_015978:352478*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete76.5564 %Subject ←→ Query24.2022
NC_002973:461712Listeria monocytogenes str. 4b F2365, complete genome75.1348 %Subject ←→ Query24.3292
NC_002663:62500Pasteurella multocida subsp. multocida str. Pm70, complete genome76.0723 %Subject ←→ Query24.6055
NC_014319:1613611Leuconostoc gasicomitatum LMG 18811, complete genome80.9712 %Subject ←→ Query24.79
NC_008021:531730*Streptococcus pyogenes MGAS9429, complete genome75.0061 %Subject ←→ Query25.026
NC_003212:456214Listeria innocua Clip11262, complete genome75.6985 %Subject ←→ Query25.2446
NC_004668:3053119*Enterococcus faecalis V583, complete genome76.2623 %Subject ←→ Query25.4317
NC_010471:1081590*Leuconostoc citreum KM20, complete genome77.0772 %Subject ←→ Query25.4742
NC_010999:349252Lactobacillus casei, complete genome75.3033 %Subject ←→ Query25.611
NC_015428:1544728*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome79.9724 %Subject ←→ Query25.6452
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome75.1838 %Subject ←→ Query25.9336
NC_011772:2763863Bacillus cereus G9842, complete genome75.0643 %Subject ←→ Query26.1671
NC_004722:1804788*Bacillus cereus ATCC 14579, complete genome75.098 %Subject ←→ Query26.5159
NC_014724:1731238*Lactobacillus amylovorus GRL 1112 chromosome, complete genome75.7843 %Subject ←→ Query26.547
NC_014724:1101950Lactobacillus amylovorus GRL 1112 chromosome, complete genome76.777 %Subject ←→ Query26.6698
NC_008525:1493317*Pediococcus pentosaceus ATCC 25745, complete genome78.8419 %Subject ←→ Query26.6901
NC_004668:2938000*Enterococcus faecalis V583, complete genome76.5411 %Subject ←→ Query26.7423
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome81.3726 %Subject ←→ Query26.7814
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome81.1183 %Subject ←→ Query26.8361
NC_009513:303043*Lactobacillus reuteri F275, complete genome78.5692 %Subject ←→ Query27.0353
NC_012984:1027898Lactobacillus plantarum JDM1, complete genome81.4737 %Subject ←→ Query27.8362
NC_008525:561000Pediococcus pentosaceus ATCC 25745, complete genome75.2267 %Subject ←→ Query28.0034
NC_008525:270310*Pediococcus pentosaceus ATCC 25745, complete genome77.5061 %Subject ←→ Query28.0475
NC_014106:419511*Lactobacillus crispatus ST1, complete genome76.2684 %Subject ←→ Query28.0783
NC_012984:3077004Lactobacillus plantarum JDM1, complete genome77.1783 %Subject ←→ Query28.2101
NC_004460:81687Vibrio vulnificus CMCP6 chromosome II, complete sequence75.046 %Subject ←→ Query28.2861
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome80.6771 %Subject ←→ Query28.4188
NC_014106:1658103*Lactobacillus crispatus ST1, complete genome75.5116 %Subject ←→ Query28.5421
NC_013895:1086500*Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, complete76.1765 %Subject ←→ Query28.8667
NC_004668:2762464*Enterococcus faecalis V583, complete genome75.8824 %Subject ←→ Query28.9547
NC_012984:2709148Lactobacillus plantarum JDM1, complete genome75.0306 %Subject ←→ Query29.0035
NC_009052:5089963Shewanella baltica OS155, complete genome76.011 %Subject ←→ Query29.0126
NC_015697:1295412*Lactobacillus reuteri SD2112 chromosome, complete genome78.1066 %Subject ←→ Query29.0596
NC_013199:1407742*Lactobacillus rhamnosus Lc 705, complete genome75.8119 %Subject ←→ Query29.5477
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome75.8517 %Subject ←→ Query29.6644
NC_012984:1074721Lactobacillus plantarum JDM1, complete genome78.5662 %Subject ←→ Query29.7281
NC_004567:1066710Lactobacillus plantarum WCFS1, complete genome75.2911 %Subject ←→ Query29.9854
NC_015214:1700000*Lactobacillus acidophilus 30SC chromosome, complete genome76.0509 %Subject ←→ Query30.2107
NC_008526:506263Lactobacillus casei ATCC 334, complete genome76.5012 %Subject ←→ Query30.2894
NC_004668:1010610*Enterococcus faecalis V583, complete genome75.0827 %Subject ←→ Query30.421
NC_009513:169146*Lactobacillus reuteri F275, complete genome79.8958 %Subject ←→ Query30.5164
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome76.3297 %Subject ←→ Query30.8386
NC_015697:1480552*Lactobacillus reuteri SD2112 chromosome, complete genome75.2298 %Subject ←→ Query30.867
NC_010999:561914Lactobacillus casei, complete genome77.0527 %Subject ←→ Query30.939
NC_004567:343500Lactobacillus plantarum WCFS1, complete genome78.8143 %Subject ←→ Query30.9556
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome78.2047 %Subject ←→ Query31.0118
NC_014724:439594*Lactobacillus amylovorus GRL 1112 chromosome, complete genome76.0355 %Subject ←→ Query31.0692
NC_015697:742500*Lactobacillus reuteri SD2112 chromosome, complete genome79.3229 %Subject ←→ Query31.0853
NC_004668:3184319*Enterococcus faecalis V583, complete genome76.8934 %Subject ←→ Query31.8458
NC_015731:867377*Nitrosomonas sp. Is79A3 chromosome, complete genome75.6556 %Subject ←→ Query31.914
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome75.6893 %Subject ←→ Query31.9404
NC_007576:471500*Lactobacillus sakei subsp. sakei 23K, complete genome77.1232 %Subject ←→ Query32.0931
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome79.1759 %Subject ←→ Query32.1055
NC_015697:1814128*Lactobacillus reuteri SD2112 chromosome, complete genome75.386 %Subject ←→ Query32.1075
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome75.8027 %Subject ←→ Query32.5093
NC_015214:437733*Lactobacillus acidophilus 30SC chromosome, complete genome75.2328 %Subject ←→ Query32.6745
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome76.538 %Subject ←→ Query33.5442
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome77.3223 %Subject ←→ Query33.7873
NC_013199:845000Lactobacillus rhamnosus Lc 705, complete genome77.6134 %Subject ←→ Query33.8589
NC_015697:33665*Lactobacillus reuteri SD2112 chromosome, complete genome76.9485 %Subject ←→ Query33.9576
NC_014727:1220869Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,77.261 %Subject ←→ Query34.3211
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome75.9651 %Subject ←→ Query35.0489
NC_007576:435713*Lactobacillus sakei subsp. sakei 23K, complete genome76.0447 %Subject ←→ Query35.5911
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome77.3836 %Subject ←→ Query39.2062
NC_010610:1580483*Lactobacillus fermentum IFO 3956, complete genome75.7292 %Subject ← Query44.2348
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome76.4767 %Subject ← Query44.835