Pre_GI Gene

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Host: NC_013199 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013199:845000 Lactobacillus rhamnosus Lc 705, complete genome

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
8452258464061182type I restriction modification system DNA specificity domain enzyme S protein hsdSQuickGO ontologyBLASTP
846497846715219predicted ORFQuickGO ontology
846787847452666CroCI family transcription regulatorQuickGO ontologyBLASTP
847619847861243transcriptional regulator xre familyQuickGO ontologyBLASTP
847885848589705phage protein antirepressor proteinQuickGO ontologyBLASTP
848590848850261predicted ORFQuickGO ontology
848843849148306predicted ORFQuickGO ontology
849223849579357hypothetical proteinBLASTP
849579849707129hypothetical proteinBLASTP
849719849937219hypothetical proteinBLASTP
849939850109171hypothetical proteinBLASTP
850121850996876prophage proteinQuickGO ontologyBLASTP
850869851780912prophage proteinQuickGO ontologyBLASTP
851796852752957Dnad Domain proteinQuickGO ontologyBLASTP
852765853250486single-stranded DNA-binding protein SSB Helix-destabilizing proteinQuickGO ontologyBLASTP
853559853774216phage protein DNA-binding proteinQuickGO ontologyBLASTP
853771853962192phage protein regulatory proteinQuickGO ontologyBLASTP
854332854781450hypothetical proteinBLASTP
854828855082255phage proteinQuickGO ontologyBLASTP
855505855969465predicted ORFQuickGO ontologyBLASTP
856351856761411conserved hypothetical protein phage proteinQuickGO ontology
856758857198441phage proteinQuickGO ontologyBLASTP
857185857403219predicted ORFQuickGO ontology
857393857725333phage proteinQuickGO ontologyBLASTP
857722857961240predicted ORFQuickGO ontologyBLASTP
857958858350393hypothetical proteinBLASTP
859051859611561predicted ORFQuickGO ontology
859676860341666predicted ORFQuickGO ontology
8609848622011218phage proteinQuickGO ontologyBLASTP
862188862718531prophage protein HNH homing endonuclease familyQuickGO ontologyBLASTP
862821863144324predicted ORFQuickGO ontology
863162863326165hypothetical protein
863363864157795phage protein HNH endonuclease familyQuickGO ontologyBLASTP
864358864813456terminase subunitQuickGO ontologyBLASTP
8648358665471713phage protein terminase large subunitQuickGO ontologyBLASTP
866559866750192predicted ORFQuickGO ontology
8667568680091254phage protein portal proteinQuickGO ontologyBLASTP
867963868592630phage protein phage prohead protein peptidase U35QuickGO ontologyBLASTP
8686348698361203phage protein major head proteinQuickGO ontologyBLASTP
869854870093240hypothetical protein
870104870463360phage protein DNA packaging proteinQuickGO ontologyBLASTP
870342870782441head-tail joining proteinQuickGO ontology
870782871168387head-tail joining protein modification system DNA specificity domainQuickGO ontologyBLASTP
871168871554387head-tail joining proteinQuickGO ontology
871588872205618phage protein major tailQuickGO ontologyBLASTP
872305872718414hypothetical protein
8728418777064866phage protein measureQuickGO ontologyBLASTP