Pre_GI Gene

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Host: NC_013199 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013199:1407742 Lactobacillus rhamnosus Lc 705, complete genome

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
14077421408512771thymidylate SynthaseQuickGO ontologyBLASTP
14086291409120492dihydrofolate Reductase NADPHQuickGO ontologyBLASTP
14092501409897648predicted ORFQuickGO ontologyBLASTP
14101391410981843DegV family proteinQuickGO ontologyBLASTP
14112441412089846Lysophospholipase L1 related esterase lipaseacylhydrolase GDSL familyQuickGO ontologyBLASTP
14120941412735642hypothetical proteinBLASTP
14127611413279519Peptide methionine sulfoxide reductase msrA Peptide MetO reductaseQuickGO ontologyBLASTP
14132821413524243D-alanyl-D-alanine carboxypeptidaseQuickGO ontologyBLASTP
141349314149351443periplasmic carboxyl-terminal proteaseQuickGO ontologyBLASTP
141530114187563456predicted ORFQuickGO ontologyBLASTP
141873114200741344predicted ORFQuickGO ontology
14200801420874795predicted ORFQuickGO ontologyBLASTP
14210861421796711hypothetical proteinBLASTP
14218141422671858ribosomal biogenesis GTPaseQuickGO ontologyBLASTP
14226551423413759Ribonuclease HII RNase HIIQuickGO ontologyBLASTP
14234611424276816DNA processing Smf protein Rossmann fold nucleotide-binding protein for DNA uptakeQuickGO ontologyBLASTP
142452114266052085DNA topoisomerase 1 DNA topoisomerase I Omega-protein Relaxing enzyme Untwisting enzyme SwivelaseQuickGO ontologyBLASTP
142677214280941323tRNA uracil-5--methyltransferase GidQuickGO ontologyBLASTP
14282911429190900tyrosine recombinase XerC subunitQuickGO ontologyBLASTP
14293091429833525ATP-dependent protease HslVU ClpYQ peptidase subunitQuickGO ontologyBLASTP