Pre_GI Gene

Some Help

Host: NC_008530 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008530:646207 Lactobacillus gasseri ATCC 33323, complete genome

Host Lineage: Lactobacillus gasseri; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus gasseri ATCC 33323 is a human isolate and is the type strain. This organism has been shown to have probiotic activities such as production of bacteriocins, macrophage stimulation and adherence to intestinal tissues. Normal gastrointestinal bacterium. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus gasseri is a rod-shaped, gram-positive anaerobe. Of the lactobacilli, it is the most amenable to DNA introduction and manipulation which should prove useful in the functional genomic analysis of this species. It has been shown to be an effective probiotic in suppressing Helicobacter pylori infections in humans.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
646207647019813hypothetical proteinBLASTP
647029647952924hypothetical proteinBLASTP
647958648263306Transcriptional regulator xre familyQuickGO ontology
648241649041801Uncharacterized phage-encoded proteinQuickGO ontologyBLASTP
649056649241186hypothetical protein
649251649463213hypothetical protein
649656649919264hypothetical protein
650098650469372Phage related proteinQuickGO ontologyBLASTP
650470650793324hypothetical protein
650806651267462Holliday junction resolvaseQuickGO ontologyBLASTP
651268651489222hypothetical protein
651523651690168hypothetical protein
651680651970291hypothetical proteinBLASTP
651973652191219hypothetical protein
652175652345171hypothetical protein
652375652905531Phage related proteinQuickGO ontology
65363565370773tRNA-GlnQuickGO ontology
653763654047285ParB-like nuclease domainQuickGO ontologyBLASTP
65429965438082tRNA-OTHERQuickGO ontology
654488655105618hypothetical proteinBLASTP
655288655944657hypothetical protein
656005656526522Phage terminase small subunitQuickGO ontologyBLASTP
656615657346732Homing nuclease of HNH family with NUMOD4 and IENR domainsQuickGO ontologyBLASTP
6573286585721245Phage terminase large subunit ATPaseQuickGO ontologyBLASTP
6585636599751413Phage portal protein SPP1 Gp6-likeQuickGO ontologyBLASTP
6599656614971533Phage Mu protein F like proteinQuickGO ontologyBLASTP
661466661678213hypothetical protein
661796662356561Phage minor structural protein GP20QuickGO ontologyBLASTP
6623566634381083Major capsid proteinQuickGO ontologyBLASTP
663447663836390hypothetical protein
663833664195363Phage related proteinQuickGO ontology
664192664626435hypothetical proteinBLASTP
664623665030408hypothetical proteinBLASTP
665005665232228hypothetical protein
6652326665871356Sheath tail proteinQuickGO ontologyBLASTP