Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:833721:834509 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 834509, End: 836836, Length: 2328

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012917:3684840:3686089368608936884162328Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage/plasmid primase, P4 family01429
NC_020211:996497:1011327101132710136752349Serratia marcescens WW4, complete genomephage/plasmid primase, P4 family0963
NC_009778:567000:5928395928395951542316Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein0961
NC_020211:103371:1041651041651064982334Serratia marcescens WW4, complete genomeP4-specific DNA primase0956
NC_014306:4376012:4407434440743444097642331Erwinia billingiae Eb661, complete genomePlasmid and phage DNA primase0934
NC_014306:4901390:4936659493665949389892331Erwinia billingiae Eb661, complete genomePhage/plasmid primase, P4 family0905
NC_011080:2870428:2886088288608828884212334Salmonella enterica subsp. enterica serovar Newport str. SL254,bacteriophage P4 DNA primase0890
NC_009436:3367194:3382164338216433844972334Enterobacter sp. 638, complete genomeplasmid and phage DNA primase0886
NC_016857:2871689:2897909289790929002422334Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74bacteriophage P4 DNA primase0885
NC_017046:2896651:2896651289665128989842334Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage P4 DNA primase0885
NC_016810:2871689:2897858289785829002422385Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage P4 DNA primase0885
NC_013956:3273340:3273675327367532759992325Pantoea ananatis LMG 20103 chromosome, complete genomeAlpha0882
NC_011147:4460726:4463371446337144657042334Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein0879
NC_006511:4465495:4468141446814144704742334Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein0879
NC_010102:2862178:2865648286564828679812334Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0875
NC_021066:5342127:5355667535566753580092343Raoultella ornithinolytica B6, complete genomeZinc binding domain / DNA primase0873
NC_013508:3593000:3604038360403836063652328Edwardsiella tarda EIB202, complete genomehypothetical protein0872
NC_011080:4703266:4718963471896347212932331Salmonella enterica subsp. enterica serovar Newport str. SL254,bacteriophage P4 DNA primase0871
NC_011740:448000:4485024485024508352334Escherichia fergusonii ATCC 35469, complete genomephage DNA primase0870
NC_003198:4676536:4692212469221246945452334Salmonella enterica subsp. enterica serovar Typhi str. CT18,Bacteriophage P4 DNA primase0868
NC_010498:4072681:4089863408986340921962334Escherichia coli SMS-3-5, complete genomeD5 family nucleoside triphosphatase0868
NC_010468:1130000:1146686114668611490192334Escherichia coli ATCC 8739, complete genomephage/plasmid primase, P4 family0865
NC_016845:575123:5911475911475934802334Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,nucleoside triphosphatase, D5 family0862
NC_002655:301940:3195023195023218922391Escherichia coli O157:H7 EDL933, complete genomealpha replication protein of prophage CP-933I0861
NC_002695:301939:3195583195583218912334Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA primase0861
NC_011353:305820:3234383234383257712334Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenucleoside triphosphatase, D5 family0861
NC_013008:306953:3247503247503270832334Escherichia coli O157:H7 str. TW14359 chromosome, complete genomealpha replication protein of prophage CP-933I0861
NC_013941:338121:3604753604753628652391Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeAlpha replication protein of prophage CP-933I0859
NC_007613:4217557:4217557421755742198902334Shigella boydii Sb227, complete genomeputative DNA primase0857
NC_013508:3188978:3219050321905032208851836Edwardsiella tarda EIB202, complete genomebacteriophage P4 DNA primase0755
NC_014121:677799:6933866933866950561671Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completenucleoside triphosphatase, D5 family0660
NC_011750:527470:5378265378265394631638Escherichia coli IAI39 chromosome, complete genomeputative DNA primase from prophage3e-129462
NC_011745:3245000:3257092325709232589121821Escherichia coli ED1a chromosome, complete genomeputative DNA primase from prophage6e-129462
NC_010939:896500:9001369001369019381803Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeputative primase9e-68258
NC_012912:4194821:4195622419562241976672046Dickeya zeae Ech1591, complete genomeP4 alpha zinc-binding domain protein4e-48193
NC_014121:677799:692723692723693337615Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completebacteriophage P4 DNA primase4e-48193
NC_013592:4295449:4298421429842143004662046Dickeya dadantii Ech586, complete genomeP4 alpha zinc-binding domain protein5e-48193
NC_012880:4117376:4117865411786541199102046Dickeya dadantii Ech703, complete genomeP4 alpha zinc-binding domain protein9e-48192
NC_003143:1233128:123682512368251237784960Yersinia pestis CO92, complete genomeputative prophage DNA primase2e-47191
NC_008149:3251196:326609032660903267049960Yersinia pestis Nepal516, complete genomeprophage DNA primase2e-47191
NC_008150:650899:653561653561654520960Yersinia pestis Antiqua, complete genomeputative prophage DNA primase2e-47191
NC_010159:1417993:142097714209771421936960Yersinia pestis Angola, complete genome2e-47191
NC_017168:4155143:415884141588414159800960Yersinia pestis A1122 chromosome, complete genomehypothetical protein2e-47191
NC_017265:1136000:113815511381551139114960Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative prophage DNA primase2e-47191
NC_005810:1130251:114511511451151146104990Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein2e-47191
NC_004088:3382148:339701133970113398000990Yersinia pestis KIM, complete genomehypothetical protein2e-47191
NC_014500:443874:4601454601454621902046Dickeya dadantii 3937 chromosome, complete genomeDNA primase3e-47190
NC_009381:2939782:295467529546752955634960Yersinia pestis Pestoides F chromosome, complete genomeprophage DNA primase4e-47190
NC_008309:555680:5687115687115706211911Haemophilus somnus 129PT, complete genomephage DNA primase-like protein6e-47189
NC_011083:2542876:2556453255645325591402688Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,zinc-binding domain of primase-helicase family1e-46189
NC_015224:3291736:3306358330635833090422685Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Zinc-binding domain of primase-helicase family4e-46187
NC_014121:1101093:1113609111360911162962688Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completezinc-binding domain of primase-helicase family protein5e-46186
CP002797:2472908:2472908247290824755952688Escherichia coli NA114, complete genomeputative phage protein9e-46186
NC_015061:1251905:1265618126561812682932676Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-44181
NC_011740:810411:8262408262408289122673Escherichia fergusonii ATCC 35469, complete genomePutative inner membrane protein (modular protein) from phage origin6e-44179
NC_011094:380428:3832303832303859022673Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-43178
NC_015968:3301958:3325863332586333285352673Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein2e-43177
NC_013956:4326388:4327056432705643297282673Pantoea ananatis LMG 20103 chromosome, complete genomeAlpha3e-43177
NC_012880:2778795:2782217278221727848532637Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF9275e-37156
NC_014500:3744705:3757707375770737603432637Dickeya dadantii 3937 chromosome, complete genomeDNA primase traC1e-34149
NC_013892:671000:6938526938526965482697Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase5e-35149
NC_013892:1272448:1299079129907913018532775Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase1e-34148
NC_013592:2703327:2707294270729427099932700Dickeya dadantii Ech586, complete genomeprotein of unknown function DUF9271e-33145
NC_014500:2019113:2039592203959220423602769Dickeya dadantii 3937 chromosome, complete genomeDNA primase traC5e-33143
NC_013892:3278647:3281299328129932824681170Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase (fragment)2e-32141
NC_010694:2716348:2731726273172627345542829Erwinia tasmaniensis, complete genomePutative prophage primase6e-28126
NC_008800:4488112:450096245009624501330369Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,1e-27125
NC_016818:3736213:374522637452263745498273Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete1e-27125
NC_009778:2951207:2967702296770229701372436Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-25118
NC_017160:1507500:152274115227411523496756Yersinia pestis D182038 chromosome, complete genomeputative prophage DNA primase5e-23110
NC_017154:1225500:122811512281151228870756Yersinia pestis D106004 chromosome, complete genomeputative prophage DNA primase5e-23110
NC_014029:1283500:128602212860221286777756Yersinia pestis Z176003 chromosome, complete genomeputative prophage DNA primase5e-23110
NC_007973:2888824:2896361289636128982591899Ralstonia metallidurans CH34 chromosome 1, complete sequencePhage/plasmid primase P4-like protein1e-1895.9
NC_012808:4078459:408016740801674081105939Methylobacterium extorquens AM1, complete genomehypothetical protein3e-1894.7
NC_017033:2081206:210437521043752105307933Frateuria aurantia DSM 6220 chromosome, complete genomehypothetical protein4e-1894
NC_009256:2725836:2727734272773427301272394Burkholderia vietnamiensis G4 chromosome 1, complete sequenceTOPRIM domain-containing protein6e-1686.7
NC_007298:2856104:288973828897382890667930Dechloromonas aromatica RCB, complete genomehypothetical protein2e-1585.1
NC_012559:2353236:2355463235546323565391077Laribacter hongkongensis HLHK9, complete genomephage P4 alpha, zinc-binding domain protein3e-1584.3
NC_004757:267165:267165267165268085921Nitrosomonas europaea ATCC 19718, complete genomeToprim domain3e-1481.3
NC_010688:3229820:3232161323216132357243564Xanthomonas campestris pv. campestris, complete genomehypothetical protein4e-1480.5
NC_003902:1680414:1703794170379417073573564Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein4e-1480.5
NC_007086:3334000:3334900333490033384633564Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein4e-1480.5
NC_016830:5031819:5038640503864050408592220Pseudomonas fluorescens F113 chromosome, complete genomevirulence-associated e family protein7e-1480.1
NC_003295:2669480:2689399268939926919452547Ralstonia solanacearum GMI1000, complete genomehypothetical protein8e-1479.7
NC_015136:2021799:2045288204528820481372850Burkholderia sp. CCGE1001 chromosome 1, complete sequenceToprim sub domain-containing protein3e-1377.8
NC_009434:1580205:159532015953201596195876Pseudomonas stutzeri A1501, complete genomeTOPRIM domain-containing protein4e-1377.4
NC_010688:3030873:3030873303087330343973525Xanthomonas campestris pv. campestris, complete genomehypothetical protein9e-1376.3
NC_017986:5509569:5526345552634555285552211Pseudomonas putida ND6 chromosome, complete genomeTraC domain-containing protein1e-1275.9
NC_002947:3404000:3421840342184034240502211Pseudomonas putida KT2440, complete genomepyocin R2_PP, traC domain protein1e-1275.9
NC_004578:3849835:3854392385439238566112220Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA primase domain protein2e-1274.7
NC_014664:1614568:1614568161456816171172550Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomehypothetical protein4e-1274.3
NC_009648:4497749:450608345060834506706624Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein4e-1273.9
NC_004129:2201780:2215930221593022181672238Pseudomonas fluorescens Pf-5, complete genomeDNA primase domain protein6e-1273.6
NC_016026:2170500:218366521836652184543879Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein8e-1273.2
NC_006351:520500:5228525228525257192868Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein1e-1172.4
NC_017506:2089769:209501420950142095910897Marinobacter adhaerens HP15 chromosome, complete genomevirulence-associated E family protein3e-1171.2
NC_012751:942315:9547339547339572192487Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeDNA primase TraC7e-1169.7
NC_007650:2429307:2455275245527524581422868Burkholderia thailandensis E264 chromosome II, complete sequenceDNA primase8e-1169.7
NC_012796:1600600:1627250162725016291331884Desulfovibrio magneticus RS-1, complete genomehypothetical protein2e-1068.2
NC_013722:218847:2332592332592357272469Xanthomonas albilineans, complete genomehypothetical protein4e-1067.4
NC_019757:3010262:3010262301026230137593498Cylindrospermum stagnale PCC 7417, complete genomephage/plasmid primase, P4 family, C-terminal domain protein8e-1066.2
NC_009074:94000:9434694346971982853Burkholderia pseudomallei 668 chromosome I, complete sequencehypothetical protein2e-0965.5
NC_015221:12389:3452534525374162892Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequencehypothetical protein2e-0964.7
NC_015761:2373967:2373967237396723770893123Salmonella bongori NCTC 12419, complete genomebacteriophage DNA primase3e-0964.3
NC_015856:3912195:3940210394021039427262517Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein5e-0963.9
NC_004632:28470:4292242922475954674Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,DNA primase TraC9e-0962.8
NC_008390:2643653:2653394265339426557872394Burkholderia cepacia AMMD chromosome 1, complete sequenceTOPRIM domain protein2e-0862
NC_016845:2274500:229102922910292292006978Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative phage DNA primase2e-0861.6
NC_008786:4102606:4119825411982541209101086Verminephrobacter eiseniae EF01-2, complete genomePhage P4 alpha, zinc-binding domain protein3e-0861.2
NC_008757:206036:2350042350042360291026Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completehypothetical protein4e-0860.8
NC_014972:480355:4964064964064988622457Desulfobulbus propionicus DSM 2032 chromosome, complete genomehypothetical protein4e-0860.8
NC_015968:3301958:330832433083243309295972Enterobacter asburiae LF7a chromosome, complete genomeP4 alpha zinc-binding domain-containing protein5e-0860.5
NC_015422:2858228:2918095291809529190991005Alicycliphilus denitrificans K601 chromosome, complete genomeP4 alpha zinc-binding domain-containing protein9e-0859.7
NC_009012:3354477:3362822336282233649752154Clostridium thermocellum ATCC 27405, complete genomephage / plasmid primase, P4 family1e-0758.9
NC_008061:2106848:2107936210793621097831848Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein2e-0758.5
NC_007298:2769525:2771125277112527721351011Dechloromonas aromatica RCB, complete genomehypothetical protein2e-0758.2
NC_015381:992401:1007868100786810106602793Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein3e-0758.2
NC_015381:1173603:1192541119254111952732733Burkholderia gladioli BSR3 chromosome 1, complete sequencepyocin R2_PP, TraC domain-containing protein3e-0757.8
NC_014253:431942:4420874420874437241638Methanohalobium evestigatum Z-7303 chromosome, complete genomephage/plasmid primase3e-0757.8
NC_009012:2356500:2366420236642023685732154Clostridium thermocellum ATCC 27405, complete genomephage / plasmid primase, P4 family4e-0757.4
NC_010682:1624985:1642205164220516432811077Ralstonia pickettii 12J chromosome 1, complete sequenceP4 alpha zinc-binding domain protein4e-0757.4
NC_007434:1322500:1346373134637313492342862Burkholderia pseudomallei 1710b chromosome I, complete sequenceinner membrane protein5e-0757
NC_011001:372185:3915163915163933631848Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein6e-0756.6
NC_014801:1:1675416754179801227Campylobacter jejuni subsp. jejuni ICDCCJ07001 plasmid pTet,cpp229e-0756.2
NC_012724:3222415:3224293322429332271692877Burkholderia glumae BGR1 chromosome 1, complete genomeInner membrane protein1e-0655.8
NC_009256:458649:4586494586494615252877Burkholderia vietnamiensis G4 chromosome 1, complete sequenceinner membrane protein2e-0655.5
NC_010515:1124298:1125386112538611272331848Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencePrimase 21e-0655.5
NC_013929:5952380:5955955595595559574121458Streptomyces scabiei 87.22 chromosome, complete genomeNTP-binding protein2e-0655.1
NC_009076:106807:1102561102561131082853Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein2e-0655.1
NC_008060:1945597:1947208194720819500842877Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceinner membrane protein3e-0654.7
NC_008542:2631138:2632749263274926356252877Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceinner membrane protein3e-0654.7
NC_010508:2776283:2778117277811727809782862Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencePrimase 24e-0654.3
NC_009012:3354477:3383076338307633852292154Clostridium thermocellum ATCC 27405, complete genomephage / plasmid primase, P4 family7e-0653.1
NC_010162:5651746:5663639566363956650151377Sorangium cellulosum 'So ce 56', complete genomehypothetical protein8e-0653.1