Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010516: Clostridium botulinum B1 str. Okra, complete genome

NCBI: NC_010516

Host Lineage: Clostridium botulinum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This organism produces one of the most potent and deadly neurotoxins known, a botulinum toxin that prevents the release of acetylcholine at the neuromuscular junction, thereby inhibiting muscle contraction and causing paralysis. In most cases the diseased person dies of asphyxiation as a result of paralysis of chest muscles involved in breathing. The spores are heat-resistant and can survive in inadequately heated, prepared, or processed foods. Spores germinate under favorable conditions (anaerobiosis and substrate-rich environment) and bacteria start propagating very rapidly, producing the toxin.Botulinum toxin, and C. botulinum cells, has been found in a wide variety of foods, including canned ones. Almost any food that has a high pH (above 4.6) can support growth of the bacterium. Honey is the most common vehicle for infection in infants. Food poisoning through C. botulinum is the most frequent type of infection caused by this bacterium. The wound botulism that occurs when C. botulinum infects an individual via an open wound is much rarer and is very similar to tetanus disease. There are several types of botulinum toxin known (type A through type F), all of them being neurotoxic polypeptides. The most common and widely distributed are strains and serovars of C. botulinum that produce type A toxin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1931119311Island text6.2648822.369541.212Neighbours21BLASTN1.gbk
242475*8420741733Island text5.9607422.898743.1953Neighbours21BLASTN+42475.gbk
3127000*15115624157Island text4.4500919.351933.1859Neighbours21BLASTN127000.gbk
435931038266123352Island text2.8422416.752831.5264Neighbours21BLASTN359310.gbk
5514000*53623322234Island text4.9278522.921342.6635Neighbours21BLASTN+514000.gbk
6583870*60159917730Island text2.7748518.771326.4953Neighbours21BLASTN583870.gbk
71382000140409922100Island text3.0689719.178636.0823Neighbours21BLASTN1382000.gbk
81999500201784518346Island text2.9626617.86831.1694Neighbours21BLASTN1999500.gbk
92064027208498120955Island text2.6015218.944633.8064Neighbours21BLASTN+2064027.gbk
102093901*211216118261Island text1.9732517.555328.4566Neighbours21BLASTN+IslandViewer 2093901.gbk
112305110232828423175Island text2.4863417.968834.9738Neighbours21BLASTN+2305110.gbk
122328288235225123964Island text3.18218.436938.336Neighbours21BLASTN+IslandViewer 2328288.gbk
132374000239681422815Island text2.4519416.646434.2246Neighbours21BLASTN2374000.gbk
142511035*254588934855Island text3.0101818.248534.3294Neighbours21BLASTN2511035.gbk
152567911*258780819898Island text3.9784518.203733.7591Neighbours21BLASTN+2567911.gbk
162594159261596321805Island text3.5321419.823537.3949Neighbours21BLASTN+2594159.gbk
172676746*271365836913Island text5.2960419.332635.8552Neighbours21BLASTN+IslandViewer 2676746.gbk
182777205280241925215Island text1.9732517.91127.0435Neighbours21BLASTN+2777205.gbk
192877407*289845321047Island text2.6407118.60129.2423Neighbours21BLASTNIslandViewer 2877407.gbk
202900057292557925523Island text3.4882818.93337.2625Neighbours21BLASTN2900057.gbk
213196158*321545819301Island text3.6252419.350435.5484Neighbours21BLASTN3196158.gbk
223234791*325832823538Island text1.8905918.324429.9976Neighbours21BLASTN3234791.gbk
233368951*339250323553Island text2.7982618.531134.1272Neighbours21BLASTN3368951.gbk
243466000348809922100Island text2.7546317.464134.1881Neighbours21BLASTN3466000.gbk
253545017356809923083Island text2.5903718.436932.6775Neighbours21BLASTN+3545017.gbk
263724312374347419163Island text2.9181118.661831.0472Neighbours21BLASTN3724312.gbk
273759136*379956240427Island text3.7655121.390539.2749Neighbours21BLASTN+3759136.gbk
283807780*384035532576Island text4.7451522.144341.3562Neighbours21BLASTN3807780.gbk
293845942*386860822667Island text3.1287518.363933.5851Neighbours21BLASTN3845942.gbk
303903867*395059846732Island text2.8585619.535835.9533Neighbours21BLASTN3903867.gbk