Pre_GI: BLASTP Hits

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Query: NC_009439:3770282:3801209 Pseudomonas mendocina ymp, complete genome

Start: 3801209, End: 3801772, Length: 564

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007298:778723:789775789775790248474Dechloromonas aromatica RCB, complete genomeNUDIX hydrolase8e-37153
NC_014323:3669704:368331436833143683880567Herbaspirillum seropedicae SmR1 chromosome, complete genomeADP-ribose pyrophosphatase7e-35146
NC_009654:4253431:425469742546974255242546Marinomonas sp. MWYL1, complete genomeNUDIX hydrolase1e-34146
NC_008786:4216152:422061642206164221212597Verminephrobacter eiseniae EF01-2, complete genomeNUDIX hydrolase1e-33142
NC_015856:3536441:354929335492933549922630Collimonas fungivorans Ter331 chromosome, complete genomeADP-ribose pyrophosphatase2e-33142
NC_010551:1462827:147709114770911477627537Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceNUDIX hydrolase5e-1787.4
NC_006347:5027580:504657650465765047100525Bacteroides fragilis YCH46, complete genomeputative mutT family protein9e-1579.7
NC_015732:30472:309183091831457540Spirochaeta caldaria DSM 7334 chromosome, complete genomeNUDIX hydrolase3e-1271.6
NC_008212:2865737:288655428865542887075522Haloquadratum walsbyi DSM 16790, complete genomeADP-ribose pyrophosphatase9e-1166.6
NC_015677:3339181:335634733563473356889543Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein2e-1065.5
NC_008781:3365468:336876133687613369294534Polaromonas naphthalenivorans CJ2, complete genomeNUDIX hydrolase3e-1065.1
NC_016114:3575955:358400335840033584467465Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeNUDIX hydrolase8e-1063.5
NC_008702:4064470:406845240684524068979528Azoarcus sp. BH72, complete genomeconserved hypothetical protein9e-1063.2
NC_013926:1037681:104213810421381042848711Aciduliprofundum boonei T469 chromosome, complete genomeNUDIX hydrolase1e-0963.2
NC_021177:4124839:413835541383554138819465Streptomyces fulvissimus DSM 40593, complete genomeNUDIX hydrolase1e-0962.4
NC_003888:6103534:613715661371566137551396Streptomyces coelicolor A3(2), complete genomemutT-like protein1e-0859.7
NC_007777:135222:161702161702162172471Frankia sp. CcI3, complete genomeNUDIX hydrolase1e-0859.3
NC_019942:1270060:127229012722901272997708Aciduliprofundum sp. MAR08-339, complete genomeADP-ribose pyrophosphatase2e-0858.5
NC_011658:4672000:468422546842254684731507Bacillus cereus AH187 chromosome, complete genomemutT/nudix family protein3e-0858.5
NC_011969:4613430:462458946245894625095507Bacillus cereus Q1 chromosome, complete genomemutt/nudix family protein3e-0858.2
NC_017200:4697500:470818347081834708689507Bacillus thuringiensis serovar finitimus YBT-020 chromosome,mutT/nudix family protein3e-0858.2
NC_004722:4824818:483444548344454834951507Bacillus cereus ATCC 14579, complete genomePhosphohydrolase (MutT/nudix family protein)3e-0858.2
NC_014171:4740500:475039047503904750896507Bacillus thuringiensis BMB171 chromosome, complete genomeMutT/NUDIX family protein phosphohydrolase3e-0858.2
NC_014002:403180:408129408129408545417Methanohalophilus mahii DSM 5219 chromosome, complete genomeNUDIX hydrolase3e-0858.2
NC_014622:3955851:397555439755543976018465Paenibacillus polymyxa SC2 chromosome, complete genomentp pyrophosphohydrolase3e-0858.2
NC_017208:4887334:488999048899904890496507Bacillus thuringiensis serovar chinensis CT-43 chromosome, completephosphohydrolase3e-0858.2
NC_003888:3602753:360978936097893610178390Streptomyces coelicolor A3(2), complete genomeMutT-like protein4e-0857.8
NC_005945:4670978:468459846845984685104507Bacillus anthracis str. Sterne, complete genomemutT/nudix family protein4e-0857.8
NC_014335:4622500:463369046336904634196507Bacillus cereus biovar anthracis str. CI chromosome, completeMutT/Nudix family protein4e-0857.8
NC_005957:4680089:468932446893244689830507Bacillus thuringiensis serovar konkukian str. 97-27, completeNudix hydrolase4e-0857.8
NC_008600:4687500:469871446987144699220507Bacillus thuringiensis str. Al Hakam, complete genomeMutT/NUDIX family protein4e-0857.8
NC_012472:4691251:470243347024334702939507Bacillus cereus 03BB102, complete genomemutT/nudix family protein4e-0857.8
NC_007530:4674335:468350146835014684007507Bacillus anthracis str. 'Ames Ancestor', complete genomemutt/nudix family protein4e-0857.8
NC_003997:4674209:468337546833754683881507Bacillus anthracis str. Ames, complete genomemutT/nudix family protein4e-0857.8
NC_011725:4870223:487445448744544874960507Bacillus cereus B4264 chromosome, complete genomemutT/nudix family protein4e-0857.8
NC_006274:4742489:475367147536714754177507Bacillus cereus E33L, complete genomeNudix hydrolase4e-0857.8
NC_016779:4645155:465633746563374656843507Bacillus cereus F837/76 chromosome, complete genomeNudix hydrolase4e-0857.8
NC_012659:4674235:468340146834014683907507Bacillus anthracis str. A0248, complete genomeMutT/NUDIX family protein4e-0857.8
NC_011773:4732457:474364047436404744146507Bacillus cereus AH820 chromosome, complete genomemutT/nudix family protein4e-0857.8
NC_013595:151500:159764159764160213450Streptosporangium roseum DSM 43021, complete genomehydrolase, NUDIX family5e-0857.4
NC_004603:3080614:310703431070343107816783Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeNADH pyrophosphatase1e-0756.2
NC_014414:1140357:118132411813241181785462Parvularcula bermudensis HTCC2503 chromosome, complete genomeNUDIX hydrolase1e-0755.8
NC_013282:1804909:180911518091151809621507Cronobacter turicensis, complete genomePhosphatase nudJ2e-0755.5
NC_009832:2211154:221724222172422217688447Serratia proteamaculans 568, complete genomeNUDIX hydrolase2e-0755.5
NC_016612:3803130:380635038063503806826477Klebsiella oxytoca KCTC 1686 chromosome, complete genomeNUDIX hydrolase2e-0755.1
NC_015566:2125403:212938321293832129829447Serratia sp. AS12 chromosome, complete genomeNUDIX hydrolase3e-0755.1
NC_015567:2125415:212939521293952129841447Serratia sp. AS9 chromosome, complete genomeNUDIX hydrolase3e-0755.1
NC_015574:2355500:236358323635832363996414Methanobacterium sp. SWAN-1 chromosome, complete genomeNUDIX hydrolase3e-0755.1
NC_016616:3585435:358790935879093588412504Dechlorosoma suillum PS chromosome, complete genomeZn-finger containing NTP pyrophosphohydrolase3e-0754.7
NC_014121:2514544:254751325475132547986474Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeNUDIX hydrolase4e-0754.3
NC_014833:406889:413473413473413931459Ruminococcus albus 7 chromosome, complete genomeNUDIX hydrolase4e-0754.3
NC_014376:787460:791507791507792127621Clostridium saccharolyticum WM1 chromosome, complete genomeNUDIX hydrolase5e-0754.3
NC_011751:1405381:140859214085921409053462Escherichia coli UMN026 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase7e-0753.9
NC_015578:61820:929219292193436516Treponema primitia ZAS-2 chromosome, complete genomeMutT/NUDIX family protein6e-0753.9
NC_008095:8772893:877578687757868776475690Myxococcus xanthus DK 1622, complete genomehydrolase, NUDIX family6e-0753.9
NC_013850:3340882:336466633646663365124459Klebsiella variicola At-22 chromosome, complete genomeNUDIX hydrolase6e-0753.9
NC_015761:1181186:118302311830231183484462Salmonella bongori NCTC 12419, complete genomemutT family protein5e-0753.9
NC_010468:2699000:271688027168802717341462Escherichia coli ATCC 8739, complete genomeNUDIX hydrolase9e-0753.5
NC_008563:1175035:117619511761951176656462Escherichia coli APEC O1, complete genomeputative phosphohydrolase9e-0753.5
NC_009800:1254409:125624612562461256707462Escherichia coli HS, complete genomehydrolase, NUDIX family9e-0753.5
NC_000913:1188999:119305011930501193511462Escherichia coli K12, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase9e-0753.5
CU928160:1232510:123572112357211236182462Escherichia coli IAI1 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_011415:1273551:127676212767621277223462Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-0753.5
NC_011601:1315746:131895713189571319418462Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase/thiamin pyrophosphate hydrolase9e-0753.5
NC_011741:1232510:123572112357211236182462Escherichia coli IAI1 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_010498:1995500:201222220122222012683462Escherichia coli SMS-3-5, complete genomeNUDIX family hydrolase9e-0753.5
CP002516:2786000:280350128035012803962462Escherichia coli KO11, complete genomeNUDIX hydrolase9e-0753.5
AP010958:1339263:134247413424741342935462Escherichia coli O103:H2 str. 12009 DNA, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_011748:1300863:130407413040741304535462Escherichia coli 55989, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
CU928145:1300863:130407413040741304535462Escherichia coli 55989 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_013353:1339263:134247413424741342935462Escherichia coli O103:H2 str. 12009, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
CP002185:1298675:130188613018861302347462Escherichia coli W, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase/thiamin pyrophosphate hydrolase9e-0753.5
NC_010473:1245284:124849512484951248956462Escherichia coli str. K-12 substr. DH10B, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_009801:1296488:129969912996991300160462Escherichia coli E24377A, complete genomehydrolase, NUDIX family9e-0753.5
AC_000091:1191353:119540411954041195865462Escherichia coli W3110 DNA, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_011742:1177946:117978311797831180244462Escherichia coli S88 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_012759:1093764:109697510969751097436462Escherichia coli BW2952 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase9e-0753.5
NC_013361:1634226:163606316360631636524462Escherichia coli O26:H11 str. 11368 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_016810:1276340:127960212796021280063462Salmonella enterica subsp. enterica serovar Typhimurium strputative mutT family protein7e-0753.5
NC_016857:1276340:127960212796021280063462Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative MutT-like protein7e-0753.5
NC_016860:1317174:132043613204361320897462Salmonella enterica subsp. enterica serovar Typhimurium strputative MutT-like protein7e-0753.5
NC_016863:1277652:128091412809141281375462Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative MutT-like protein7e-0753.5
NC_017046:1277787:127967512796751280136462Salmonella enterica subsp. enterica serovar Typhimurium str. 798mutT family protein7e-0753.5
NC_011094:1282385:128644512864451286906462Salmonella enterica subsp. enterica serovar Schwarzengrund strNUDIX family hydrolase7e-0753.5
NC_011205:2024458:204379120437912044252462Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853NUDIX family hydrolase7e-0753.5
NC_012883:1283529:128434612843461284897552Thermococcus sibiricus MM 739, complete genomeADP-ribose pyrophosphatase7e-0753.5
NC_003197:1320861:132274913227491323210462Salmonella typhimurium LT2, complete genomeputative MutT-like protein7e-0753.5
NC_014165:3559305:357717235771723577558387Thermobispora bispora DSM 43833 chromosome, complete genomeNUDIX hydrolase8e-0753.5
NC_013364:1477248:150387615038761504337462Escherichia coli O111:H- str. 11128, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase9e-0753.5
NC_013941:1460144:146130414613041461765462Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphatase nudJ9e-0753.5
NC_016902:2786000:280350128035012803962462Escherichia coli KO11FL chromosome, complete genomeNUDIX hydrolase9e-0753.5
NC_011083:1323827:132708913270891327550462Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hydrolase, NUDIX family8e-0753.5
NC_011080:1321268:132453013245301324991462Salmonella enterica subsp. enterica serovar Newport str. SL254,hydrolase, NUDIX family8e-0753.5
NC_011149:1870931:189093218909321891393462Salmonella enterica subsp. enterica serovar Agona str. SL483,hydrolase, NUDIX family8e-0753.5
NC_012947:2566754:258473025847302585191462Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeNUDIX hydrolase8e-0753.5
NC_012967:1205985:120919612091961209657462Escherichia coli B str. REL606 chromosome, complete genomebifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase8e-0753.5
NC_012731:2083650:208688320868832087341459Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative NUDIX hydrolase1e-0653.1
NC_009725:496443:5486775486775499121236Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein1e-0653.1
NC_020410:495184:5312675312675325051239Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeUncharacterized 45.4 kDa protein in thiaminase I 5'region (Protein nagD homolog)1e-0653.1
NC_013235:508585:5230335230335246251593Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF11521e-0653.1
NC_011884:1998559:201802520180252018714690Cyanothece sp. PCC 7425, complete genomeNUDIX hydrolase1e-0653.1
NC_014033:395000:412562412562412981420Prevotella ruminicola 23 chromosome, complete genomeADP-ribose pyrophosphatase9e-0753.1
NC_011274:1928939:194826019482601948721462Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91mutT family protein9e-0753.1
NC_011294:1896168:191549319154931915954462Salmonella enterica subsp. enterica serovar Enteritidis strmutT family protein9e-0753.1
NC_012125:2531817:255113225511322551593462Salmonella enterica subsp. enterica serovar Paratyphi C strainMutT family protein9e-0753.1
NC_016831:1083871:108575910857591086220462Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative mutT family protein9e-0753.1
NC_010658:1193225:119873511987351199196462Shigella boydii CDC 3083-94, complete genomehydrolase, NUDIX family9e-0753.1
NC_003909:3941282:394128239412823941746465Bacillus cereus ATCC 10987, complete genomemutT/nudix family protein9e-0753.1
NC_008062:81338:872898728987750462Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceNUDIX hydrolase1e-0652.8
NC_014171:4039120:403964940396494040113465Bacillus thuringiensis BMB171 chromosome, complete genomeMutT/NUDIX family protein phosphohydrolase1e-0652.8
NC_008544:55451:651086510865539432Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceNUDIX hydrolase1e-0652.8
NC_007604:1875268:187579718757971876243447Synechococcus elongatus PCC 7942, complete genomemutator MutT-like1e-0652.8
NC_006576:2423250:244080824408082441254447Synechococcus elongatus PCC 6301, complete genomemutator MutT homolog1e-0652.8
NC_009674:2923707:292370729237072924180474Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeNUDIX hydrolase1e-0652.8
NC_007712:1791766:179538617953861795682297Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-0652.4
NC_010184:4021688:402450140245014024965465Bacillus weihenstephanensis KBAB4, complete genomeNUDIX hydrolase2e-0652.4
NC_015061:3147691:316847331684733168919447Rahnella sp. Y9602 chromosome, complete genomeNUDIX hydrolase2e-0652.4
NC_017047:3212000:323307532330753233521447Rahnella aquatilis HX2 chromosome, complete genomeNUDIX hydrolase2e-0652.4
NC_011725:4159000:415908141590814159545465Bacillus cereus B4264 chromosome, complete genomeNUDIX family hydrolase2e-0652.4
NC_009792:1739970:174205617420561742517462Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0652
NC_013440:8717500:873205987320598732748690Haliangium ochraceum DSM 14365, complete genomeNUDIX hydrolase2e-0652
NC_011969:3879412:388245538824553882913459Bacillus cereus Q1 chromosome, complete genomemutt/nudix family protein2e-0652
NC_011772:4125996:412732441273244127788465Bacillus cereus G9842, complete genomehydrolase, NUDIX family2e-0652
NC_003155:4906639:491378649137864914274489Streptomyces avermitilis MA-4680, complete genomeMutT-like protein3e-0651.6
NC_011773:3982008:398553439855343985998465Bacillus cereus AH820 chromosome, complete genomeNUDIX family hydrolase3e-0651.6
NC_005957:3975192:397978839797883980252465Bacillus thuringiensis serovar konkukian str. 97-27, completeMutT/Nudix family protein3e-0651.6
NC_008600:3976045:397957139795713980035465Bacillus thuringiensis str. Al Hakam, complete genomeMutT/NUDIX family protein3e-0651.6
NC_016779:3913627:391471339147133915177465Bacillus cereus F837/76 chromosome, complete genomephosphohydrolase3e-0651.6
NC_014335:3902155:390271239027123903170459Bacillus cereus biovar anthracis str. CI chromosome, completeMutT/Nudix family protein3e-0651.6
NC_003997:3993223:399322339932233993648426Bacillus anthracis str. Ames, complete genomemutT/nudix family protein3e-0651.6
NC_007530:3992228:399335039933503993775426Bacillus anthracis str. 'Ames Ancestor', complete genomemutt/nudix family protein3e-0651.6
NC_005945:3992600:399372239937223994147426Bacillus anthracis str. Sterne, complete genomemutT/nudix family protein3e-0651.6
NC_012659:3992684:399325039932503993675426Bacillus anthracis str. A0248, complete genome3e-0651.6
NC_016109:4645905:465854046585404658956417Kitasatospora setae KM-6054, complete genomeputative hydrolase3e-0651.2
NC_014374:344500:350820350820351320501Acidilobus saccharovorans 345-15 chromosome, complete genomeNUDIX hydrolase5e-0650.8
NC_014500:2589089:260635526063552606813459Dickeya dadantii 3937 chromosome, complete genomethiamin pyrophosphate (TPP) hydrolase7e-0650.4
NC_003909:3432073:345708534570853457498414Bacillus cereus ATCC 10987, complete genomemutT/nudix family protein6e-0650.4
NC_016818:3148000:316895531689553169401447Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeADP-ribose pyrophosphatase6e-0650.4
NC_008600:3488000:351028935102893510708420Bacillus thuringiensis str. Al Hakam, complete genomeMutT/NUDIX family protein6e-0650.4
NC_012472:3503000:352525135252513525664414Bacillus cereus 03BB102, complete genomemutT/nudix family protein6e-0650.4
NC_006274:3490598:351273435127343513147414Bacillus cereus E33L, complete genomephosphohydrolase, MutT/Nudix family6e-0650.4
NC_012797:1:258442584426323480Desulfovibrio magneticus RS-1 plasmid pDMC1, complete sequencehypothetical protein7e-0650.4