Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:1254409 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12544091255050642hypothetical proteinBLASTP
125508612561921107tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseQuickGO ontologyBLASTP
12562461256707462hydrolase NUDIX familyQuickGO ontologyBLASTP
12567171257370654ribosomal large subunit pseudouridine synthase EQuickGO ontologyBLASTP
125754212587921251isocitrate dehydrogenase NADP-dependentQuickGO ontologyBLASTP
12599211260325405hypothetical proteinBLASTP
12605461261277732transcriptional regulator mlrAQuickGO ontologyBLASTP
126148212626931212BLUF domaincyclic diguanylate phosphodiesterase EAL domain proteinQuickGO ontologyBLASTP
12633331264145813ISEhe3 transposase orfBQuickGO ontologyBLASTP
12642021264480279ISEhe3 transposase orfAQuickGO ontologyBLASTP
12648181265084267hypothetical proteinBLASTP
12651971265445249hypothetical proteinBLASTP
126573512673001566cyclic diguanylate phosphodiesterase EAL domain proteinQuickGO ontologyBLASTP
12674321267650219hypothetical proteinBLASTP
12677431267886144hypothetical proteinBLASTP
126805012695701521hypothetical proteinBLASTP
12707541271083330hypothetical proteinBLASTP
12710931271437345hypothetical proteinBLASTP
12714391271612174hypothetical proteinBLASTP
12718591271978120hypothetical proteinBLASTP
12721441272356213hypothetical proteinBLASTP
12727281272994267cell division topological specificity factor MinEQuickGO ontologyBLASTP
12729981273810813septum site-determining protein MinDQuickGO ontologyBLASTP
12738341274544711septum site-determining protein MinCQuickGO ontologyBLASTP
12750491275417369putative fels-1 Prophage ProteinQuickGO ontologyBLASTP
12755201275921402bacterial pre-peptidase C-terminal domain proteinQuickGO ontologyBLASTP
12761631276456294hypothetical proteinBLASTP
12765281277187660fumarylacetoacetate hydrolase family proteinQuickGO ontologyBLASTP
12772641277725462hypothetical proteinBLASTP
12789701279080111hypothetical proteinBLASTP
1279068127914679C0299 RNAQuickGO ontology