Pre_GI Gene

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Host: NC_007604 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007604:1875268 Synechococcus elongatus PCC 7942, complete genome

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
18752681875741474bacterioferritin comigratory proteinQuickGO ontologyBLASTP
18757971876243447mutator MutT-likeQuickGO ontologyBLASTP
18762161876959744putative transcriptional acitvator BafQuickGO ontologyBLASTP
187702518787401716flavoproteinQuickGO ontologyBLASTP
187895618807101755flavoproteinQuickGO ontologyBLASTP
188098118840943114diguanylate cyclase GGDEF domain with PASPAC sensorQuickGO ontologyBLASTP
18840961884374279hypothetical protein
188443418863501917ATP-binding region ATPase-likeQuickGO ontologyBLASTP
18864771887205729cyclic nucleotide-binding domain cNMP-BD proteinQuickGO ontologyBLASTP
188721618884511236response regulator receiver domain protein CheY-likeQuickGO ontologyBLASTP
188844418913772934periplasmic sensor hybrid histidine kinaseQuickGO ontologyBLASTP
18914231891788366response regulator receiver domain protein CheY-likeQuickGO ontologyBLASTP
18918911892208318hypothetical proteinBLASTP
18923461892930585hypothetical proteinBLASTP
18930071893735729hypothetical proteinBLASTP
18939041894263360hypothetical protein
18942911894503213hypothetical protein
18945001895159660PBS lyase HEAT-like repeatQuickGO ontologyBLASTP
18951661895630465CBSQuickGO ontologyBLASTP
18957071896225519CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferaseQuickGO ontologyBLASTP
18962221897163942mRNA-binding proteinQuickGO ontologyBLASTP