Pre_GI Gene

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Host: NC_011205 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011205:2024458 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
20236672024464798Adipeptidedi-oligopeptidenickel ABC transporter ATP binding subunitQuickGO ontologyBLASTP
20244582025270813Adipeptidedi-oligopeptidenickel ABC transporter permease subunitQuickGO ontologyBLASTP
20252602026234975dipeptideoligopeptidenickel ABC transporter permeaseQuickGO ontologyBLASTP
202623420278681635nickel ABC transporter periplasmic nickel-binding proteinQuickGO ontologyBLASTP
20280112028154144hypothetical proteinBLASTP
20283002028458159hypothetical proteinBLASTP
20284352028569135hypothetical protein
20285502028864315hypothetical proteinBLASTP
20290132029543531nickel-dependent hydrogenase B-type cytochrome subunitQuickGO ontologyBLASTP
20310092031479471heat shock proteinQuickGO ontologyBLASTP
20317962031969174hypothetical proteinBLASTP
20321012032226126hypothetical proteinBLASTP
20326042032948345lysozyme inhibitorQuickGO ontologyBLASTP
20341702034727558virulence membrane protein PagCQuickGO ontologyBLASTP
20351072035235129hypothetical proteinBLASTP
20357652035893129hypothetical proteinBLASTP
20365612037082522envelope protein EnvEQuickGO ontologyBLASTP
20372732037512240hypothetical proteinBLASTP
203978120409051125hypothetical proteinBLASTP
204136620426161251isocitrate dehydrogenaseQuickGO ontologyBLASTP
20427162043453738RNA pseudouridine synthase family proteinQuickGO ontologyBLASTP
20434502043779330hypothetical proteinBLASTP
20437912044252462NUDIX family hydrolaseQuickGO ontologyBLASTP
204430620454121107tRNA-specific 2-thiouridylase MnmAQuickGO ontologyBLASTP
20454992046140642hypothetical proteinBLASTP
204614420475141371adenylosuccinate lyaseQuickGO ontologyBLASTP
20476382048312675DNA-binding transcriptional regulator PhoPQuickGO ontologyBLASTP
204831220497751464sensor protein PhoQQuickGO ontologyBLASTP
204985620509771122cupin family proteinQuickGO ontologyBLASTP
205101720523511335hypothetical proteinBLASTP
205235520535841230peptidase TQuickGO ontologyBLASTP