Pre_GI Gene

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Host: NC_004603 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004603:3080614 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
308061430822061593bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferaseIMP cyclohydrolaseQuickGO ontologyBLASTP
30822293082330102hypothetical protein
308236030836491290phosphoribosylamine--glycine ligaseQuickGO ontologyBLASTP
30837373084468732hypothetical protein
308484630863481503hypothetical proteinBLASTP
308645530876721218hypothetical proteinBLASTP
308786430889971134hypothetical proteinBLASTP
308919730905551359hypothetical proteinBLASTP
3090589309068193hypothetical protein
309087830932442367hypothetical protein
30935033093793291hypothetical protein
30940383094466429hypothetical protein
309446630971112646hypothetical proteinBLASTP
309710430987081605hypothetical proteinBLASTP
309870830999791272hypothetical proteinBLASTP
31002123100487276DNA-binding protein HU-2QuickGO ontologyBLASTP
310074131018681128hypothetical proteinBLASTP
31019273102514588hypothetical proteinBLASTP
31025813103504924D-isomer specific 2-hydroxyacid dehydrogenase family proteinQuickGO ontologyBLASTP
31035103104082573hypothetical proteinBLASTP
310430231053691068uroporphyrinogen decarboxylaseQuickGO ontologyBLASTP
31056743106417744hypothetical protein
31064223106958537hypothetical protein
31070343107816783NADH pyrophosphataseQuickGO ontologyBLASTP
31079953108486492regulator of sigma DQuickGO ontology
310861531128174203DNA-directed RNA polymerase beta subunitQuickGO ontologyBLASTP