Pre_GI: BLASTP Hits

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Query: NC_007951:4608560:4627865 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4627865, End: 4628875, Length: 1011

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014374:344500:349736349736350725990Acidilobus saccharovorans 345-15 chromosome, complete genomehypothetical protein3e-1169.7
NC_018704:81733:8173381733831361404Amphibacillus xylanus NBRC 15112, complete genometRNA(Ile)-lysidine synthase8e-0961.6
NC_008710:819389:8323068323068336251320Borrelia turicatae 91E135, complete genometRNA(Ile)-lysidine synthetase TilS4e-0755.8
NC_015381:4182194:418259541825954183584990Burkholderia gladioli BSR3 chromosome 1, complete sequencePP-loop family protein3e-157554
NC_016589:2875000:2903444290344429044511008Burkholderia sp. YI23 chromosome 1, complete sequencePP-loop domain-containing protein1e-165582
NC_014758:1489761:1510126151012615113881263Calditerrivibrio nitroreducens DSM 19672 chromosome, completetRNA(ile)-lysidine synthetase3e-1273.2
NC_008599:1489868:149288114928811493633753Campylobacter fetus subsp. fetus 82-40, complete genomePP-loop family protein2e-25116
NC_005861:1027000:104063410406341041374741Candidatus Protochlamydia amoebophila UWE25, complete genomehypothetical protein1e-24114
NC_013716:1756545:176912717691271770062936Citrobacter rodentium ICC168, complete genometRNA 2-thiocytidine biosynthesis protein ttcA6e-116417
NC_018664:2459994:2484668248466824860501383Clostridium acidurici 9a chromosome, complete genometRNA(Ile)-lysidine synthase2e-0963.2
NC_009697:3463736:348320934832093483958750Clostridium botulinum A str. ATCC 19397 chromosome, completePP-loop family protein6e-29128
NC_009495:183767:199073199073199795723Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein4e-35149
NC_009495:3502000:350722135072213507970750Clostridium botulinum A str. ATCC 3502 chromosome, complete genomePP-loop family protein6e-29128
NC_009495:3735703:3769960376996037713661407Clostridium botulinum A str. ATCC 3502 chromosome, complete genometRNA(Ile)-lysidine synthetase8e-0651.6
NC_009698:3609881:3643059364305936444651407Clostridium botulinum A str. Hall chromosome, complete genometRNA(Ile)-lysidine synthetase8e-0651.6
NC_009698:3359766:338031733803173381066750Clostridium botulinum A str. Hall chromosome, complete genomePP-loop family protein6e-29128
NC_012563:3729817:374929537492953750044750Clostridium botulinum A2 str. Kyoto, complete genomePP-loop family protein9e-29127
NC_010520:3580000:358509335850933585842750Clostridium botulinum A3 str. Loch Maree, complete genomePP-loop family protein2e-26120
NC_015425:163000:1656221656221670251404Clostridium botulinum BKT015925 chromosome, complete genomecell cycle protein MesJ1e-1274.7
NC_015425:2389400:239992923999292400630702Clostridium botulinum BKT015925 chromosome, complete genomePP-loop family protein1e-31137
NC_010723:173280:1812001812001826061407Clostridium botulinum E3 str. Alaska E43, complete genometRNA(Ile)-lysidine synthase1e-1377.8
NC_017297:3594000:359947135994713600220750Clostridium botulinum F str. 230613 chromosome, complete genomePP-loop family protein1e-28127
NC_009699:3839575:3872747387274738741531407Clostridium botulinum F str. Langeland chromosome, complete genometRNA(Ile)-lysidine synthetase9e-0651.2
NC_009699:3581376:360085536008553601604750Clostridium botulinum F str. Langeland chromosome, complete genomePP-loop family protein1e-28127
NC_009089:4140764:4161747416174741631351389Clostridium difficile 630, complete genomeputative ATPase2e-1273.6
NC_013316:4018451:4040068404006840414561389Clostridium difficile R20291, complete genomeputative ATPase2e-1273.6
NC_015275:3680323:3680323368032336816961374Clostridium lentocellum DSM 5427 chromosome, complete genometRNA(Ile)-lysidine synthetase7e-0651.6
NC_014328:4471995:4497934449793444993401407Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative tRNA(Ile)-lysidine synthase7e-1375.1
NC_008593:153014:1555461555461569401395Clostridium novyi NT, complete genomeCell cycle protein MesJ, putative2e-1067
NC_008593:2136759:214340821434082144145738Clostridium novyi NT, complete genomehypothetical protein1e-31137
NC_008262:2649289:2693810269381026952191410Clostridium perfringens SM101, complete genometRNA(Ile)-lysidine synthetase1e-1067.4
NC_020291:117983:1330981330981345041407Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometRNA(Ile)-lysidine synthase TilS3e-0652.8
NC_015737:1385585:1391393139139313925441152Clostridium sp. SY8519, complete genomehypothetical protein8e-36151
NC_004557:162670:1626701626701640731404Clostridium tetani E88, complete genomecell cycle protein mesJ9e-1271.2
NC_009012:2661795:2683143268314326845551413Clostridium thermocellum ATCC 27405, complete genometRNA(Ile)-lysidine synthetase2e-1480.1
NC_013939:1023443:1026346102634610276051260Deferribacter desulfuricans SSM1, complete genomecell cycle protein MesJ4e-0859.3
NC_013939:1460142:147256914725691473240672Deferribacter desulfuricans SSM1, complete genomehypothetical protein1e-1273.9
NC_013173:1671288:167528116752811676219939Desulfomicrobium baculatum DSM 4028, complete genomePP-loop domain protein4e-0756.2
NC_014844:2638994:264204526420452642974930Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePP-loop domain-containing protein2e-0860.1
NC_014121:1848971:185572818557281856663936Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeC32 tRNA thiolase1e-113409
NC_020063:2449554:246555224655522466487936Enterobacteriaceae bacterium strain FGI 57, complete genomeputative ATPase of the PP-loop superfamily implicated in cell cycle control5e-115414
NC_012947:2366000:238526623852662386201936Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeC32 tRNA thiolase7e-115414
NC_012967:1403733:140818314081831409118936Escherichia coli B str. REL606 chromosome, complete genomeC32 tRNA thiolase7e-115414
NC_012759:1296000:130109613010961302031936Escherichia coli BW2952 chromosome, complete genomeC32 tRNA thiolase7e-115414
NC_000913:1404000:140903714090371409972936Escherichia coli K12, complete genomepredicted C32 tRNA thiolase7e-115414
CP002516:2580774:260536326053632606298936Escherichia coli KO11, complete genomePP-loop domain protein6e-115414
NC_016902:2580774:260536326053632606298936Escherichia coli KO11FL chromosome, complete genomePP-loop domain-containing protein6e-115414
NC_011415:1472500:147444114744411475376936Escherichia coli SE11 chromosome, complete genomeC32 tRNA thiolase7e-115414
NC_010473:1493983:149843314984331499368936Escherichia coli str. K-12 substr. DH10B, complete genomeputative tRNA 2-thiocytidine (s(2)C32) synthase7e-115414
CP002185:1493280:149955214995521500487936Escherichia coli W, complete genomepredicted C32 tRNA thiolase6e-115414
AC_000091:1407693:141272714127271413662936Escherichia coli W3110 DNA, complete genomepredicted C32 tRNA thiolase7e-115414
NC_013849:933913:949846949846950718873Ferroglobus placidus DSM 10642 chromosome, complete genomePP-loop domain protein4e-1375.5
NC_020054:4795000:4814976481497648163371362Fibrella aestuarina BUZ 2 drat genometRNA(Ile)-lysidine synthase1e-0964.7
NC_013410:1651000:165494716549471655708762Fibrobacter succinogenes subsp. succinogenes S85 chromosome,PP-loop domain-containing protein9e-30130
NC_015948:2421933:243531324353132436308996Haloarcula hispanica ATCC 33960 chromosome chromosome I, completePP-loop domain-containing protein2e-1067
NC_013202:149473:171414171414172412999Halomicrobium mukohataei DSM 12286, complete genomePP-loop domain protein2e-0860.1
NC_017378:1175639:118052011805201181281762Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein2e-31136
NC_017379:1233482:123836712383671239128762Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein4e-31135
NC_009776:617532:6363546363546375051152Ignicoccus hospitalis KIN4/I, complete genomePP-loop domain protein8e-0651.6
NC_009648:1541699:154169915416991542634936Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeC32 tRNA thiolase5e-113407
NC_009515:510121:531360531360532277918Methanobrevibacter smithii ATCC 35061, complete genomePP family ATPase5e-1582
NC_000909:404961:4270914270914281041014Methanocaldococcus jannaschii DSM 2661, complete genomehypothetical protein2e-0756.6
NC_013887:1668913:1691825169182516928351011Methanocaldococcus sp. FS406-22 chromosome, complete genomePP-loop domain protein1e-0757.8
NC_013407:1177731:118883811888381189755918Methanocaldococcus vulcanius M7, complete genomePP-loop domain protein9e-1064.7
NC_009635:800000:822629822629823564936Methanococcus aeolicus Nankai-3 chromosome, complete genomePP-loop domain-containing protein2e-0963.2
NC_009635:800000:8249398249398259431005Methanococcus aeolicus Nankai-3 chromosome, complete genomePP-loop domain-containing protein2e-0963.9
NC_009975:1203372:122850712285071229481975Methanococcus maripaludis C6, complete genomePP-loop domain protein6e-1168.6
NC_009975:1203372:122556212255621226497936Methanococcus maripaludis C6, complete genomePP-loop domain protein7e-0755.1
NC_009637:602079:603943603943604878936Methanococcus maripaludis C7 chromosome, complete genomePP-loop domain-containing protein1e-0757.4
NC_005791:1334880:133557813355781336522945Methanococcus maripaludis S2, complete genomehypothetical protein5e-0858.9
NC_015847:1418036:141990114199011420836936Methanococcus maripaludis XI chromosome, complete genomePP-loop domain-containing protein5e-0858.9
NC_009634:714715:715694715694716620927Methanococcus vannielii SB chromosome, complete genomePP-loop domain-containing protein2e-0860.1
NC_008942:960306:963510963510964412903Methanocorpusculum labreanum Z, complete genomehypothetical protein2e-1273.6
NC_008825:564392:586478586478587419942Methylibium petroleiphilum PM1, complete genomehypothetical protein9e-121433
NC_005213:202400:255499255499256305807Nanoarchaeum equitans Kin4-M, complete genomehypothetical protein2e-1273.2
NC_014315:1668366:168172916817291682613885Nitrosococcus watsoni C-113 chromosome, complete genomePP-loop domain-containing protein5e-111400
NC_015731:25493:254932549326398906Nitrosomonas sp. Is79A3 chromosome, complete genometRNA 2-thiocytidine biosynthesis protein TtcA6e-110397
NC_014483:39729:5869858698601461449Paenibacillus polymyxa E681 chromosome, complete genometRNA(Ile)-lysidine synthase9e-0961.2
NC_016641:1639356:1657391165739116588391449Paenibacillus terrae HPL-003 chromosome, complete genometRNA(Ile)-lysidine synthase8e-1064.7
NC_012917:2641000:265690226569022657837936Pectobacterium carotovorum subsp. carotovorum PC1, complete genomePP-loop domain protein2e-116419
NC_007498:1148249:1168260116826011696361377Pelobacter carbinolicus DSM 2380, complete genomecell cycle protein6e-0858.5
NC_011770:4542183:454432145443214545145825Pseudomonas aeruginosa LESB58, complete genomeputative ATPase of the PP-loop superfamily6e-106384
NC_008463:4342119:434425743442574345081825Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative ATPase of the PP-loop superfamily6e-106384
NC_015931:1653604:1653604165360416546471044Pyrolobus fumarii 1A, complete genomePP-loop domain containing protein5e-1582.4
NC_015931:1537960:154828615482861549212927Pyrolobus fumarii 1A, complete genomePP-loop domain containing protein2e-1480.1
NC_008209:1385094:138509413850941386023930Roseobacter denitrificans OCh 114, complete genomehypothetical protein5e-78291
NC_015761:1630000:163960516396051640540936Salmonella bongori NCTC 12419, complete genomehypothetical protein3e-114411
NC_011149:1429523:145488714548871455822936Salmonella enterica subsp. enterica serovar Agona str. SL483,YdaO1e-114412
NC_011294:1465500:146842814684281469363936Salmonella enterica subsp. enterica serovar Enteritidis strC32 tRNA thiolase9e-115413
NC_009092:2282437:230676723067672307720954Shewanella loihica PV-4, complete genomePP-loop domain protein4e-105381
NC_018868:282738:299473299473300393921Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein7e-109394
NC_014205:760428:763414763414764409996Staphylothermus hellenicus DSM 12710 chromosome, complete genomePP-loop domain protein4e-1272.4
NC_006449:5046:1078810788120531266Streptococcus thermophilus CNRZ1066, complete genomeputative cell-cycle protein, MesJ/Ycf62 family8e-0858.2
NC_006448:5046:1078810788120531266Streptococcus thermophilus LMG 18311, complete genomeputative cell-cycle protein, MesJ/Ycf62 family8e-0858.2
NC_012588:1419318:143754814375481438519972Sulfolobus islandicus M.14.25 chromosome, complete genomePP-loop domain-containing protein6e-1065.5
NC_012632:1543735:156196515619651562936972Sulfolobus islandicus M.16.27 chromosome, complete genomePP-loop domain-containing protein6e-1065.1
NC_012622:1395601:141489314148931415864972Sulfolobus islandicus Y.G.57.14 chromosome, complete genomePP-loop domain-containing protein6e-1065.5
NC_012623:1141951:114222811422281143199972Sulfolobus islandicus Y.N.15.51 chromosome, complete genomePP-loop domain-containing protein6e-1065.5
NC_002754:513790:514553514553515524972Sulfolobus solfataricus P2, complete genomehypothetical protein1e-1067.8
NC_003106:1457802:145808914580891459057969Sulfolobus tokodaii str. 7, complete genomehypothetical veg136 protein1e-0757.8
NC_014964:1353939:136718913671891367896708Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completePP-loop domain-containing protein6e-31134
NC_013921:1344000:135699113569911357698708Thermoanaerobacter italicus Ab9 chromosome, complete genomePP-loop domain protein2e-31136
NC_014209:1363151:137674813767481377455708Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,PP-loop domain protein5e-31135
NC_010321:1361748:137499913749991375706708Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completePP-loop domain-containing protein6e-31134
NC_014538:1125000:113204111320411132748708Thermoanaerobacter sp. X513 chromosome, complete genomePP-loop domain-containing protein5e-31135
NC_014538:73272:788567885679749894Thermoanaerobacter sp. X513 chromosome, complete genomeATPase3e-0859.7
NC_010320:819326:8235828235828249581377Thermoanaerobacter sp. X514 chromosome, complete genometRNA(Ile)-lysidine synthetase2e-1067
NC_010320:1805818:182159518215951822302708Thermoanaerobacter sp. X514 chromosome, complete genomePP-loop domain-containing protein5e-31135
NC_010320:1769486:178549117854911786384894Thermoanaerobacter sp. X514 chromosome, complete genomePP-loop domain-containing protein3e-0859.7
NC_003869:2267627:2283780228378022851831404Thermoanaerobacter tengcongensis MB4, complete genomepredicted ATPase of the PP-loop superfamily implicated in cell cycle control4e-1272.8
NC_015958:1465631:147908314790831479790708Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomePP-loop domain-containing protein2e-32140
NC_015958:84270:949399493995832894Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genometRNA methyl transferase-like protein2e-0860.5
NC_015958:2361551:2377798237779823791741377Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genometRNA(Ile)-lysidine synthase1e-1067.4
NC_011529:1554500:155663715566371557608972Thermococcus onnurineus NA1, complete genomeATPase1e-1480.9
NC_015865:1260461:128320912832091284117909Thermococcus sp. 4557 chromosome, complete genomeATPase6e-0858.5
NC_016051:1429800:145592514559251456902978Thermococcus sp. AM4 chromosome, complete genomePP-loop superfamily ATPase4e-1582.8
NC_015499:1403447:141819014181901418915726Thermodesulfobium narugense DSM 14796 chromosome, complete genomePP-loop domain protein1e-1584
NC_018012:4184500:418915041891504189950801Thiocystis violascens DSM 198 chromosome, complete genomeputative ATPase of the PP-loop superfamily implicated in cell cycle control6e-41168
NC_019940:1309359:132790513279051328654750Thioflavicoccus mobilis 8321 chromosome, complete genomeATPase of the PP-loop superfamily implicated in cell cycle control2e-39162
NC_015577:3244857:324485732448573245621765Treponema azotonutricium ZAS-9 chromosome, complete genomeATPase, PP-loop superfamily3e-24112
NC_008800:2298000:230832423083242309265942Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,C32 tRNA thiolase5e-114410