Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:1651000 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
16510321651727696hypothetical proteinBLASTP
16517381652421684hypothetical proteinBLASTP
16524691653287819peptidase M23QuickGO ontologyBLASTP
16532741653555282hypothetical protein
16536191653768150hypothetical protein
165377216548931122DNA polymerase III subunit betaQuickGO ontologyBLASTP
16549471655708762PP-loop domain-containing proteinQuickGO ontologyBLASTP
16557421656419678hypothetical proteinBLASTP
165644016575131074hypothetical proteinBLASTP
16575151657625111hypothetical protein
16580681658225158
16582161658593378hypothetical protein
165884016607681929hypothetical proteinBLASTP
16607801661346567hypothetical proteinBLASTP
16615201662041522hypothetical proteinBLASTP
16620281662543516hypothetical proteinBLASTP
166262516638511227restriction modification system DNA specificity domain-containing proteinQuickGO ontologyBLASTP
166399416658681875N-6 DNA methylaseQuickGO ontologyBLASTP
166590016690223123HsdR family type I site-specific deoxyribonucleaseQuickGO ontologyBLASTP
16692961669790495Virulence protein-like proteinQuickGO ontologyBLASTP
16699961670412417hypothetical protein
16704431671348906transcriptional regulator LysR familyQuickGO ontologyBLASTP
1671490167375722685- methyltetrahydropteroyltriglutamatehomocysteine S-methyltransferaseQuickGO ontologyBLASTP
167405116752381188cytosinepurines uracil thiamine allantoin permeaseQuickGO ontologyBLASTP
16752521676082831phosphomethylpyrimidine kinase type-1QuickGO ontologyBLASTP
16760841676743660radical SAM proteinQuickGO ontologyBLASTP
16770971677684588hypothetical proteinBLASTP
16778131678472660von Willebrand factor type AQuickGO ontologyBLASTP
167863416796771044Appr-1-p processing proteinQuickGO ontologyBLASTP
16797151680608894hypothetical proteinBLASTP
168065916819001242lipoproteinQuickGO ontologyBLASTP
168204216831721131hypothetical proteinBLASTP
16833301683833504hypothetical proteinBLASTP
16839321684555624lipoproteinQuickGO ontologyBLASTP
168475216866141863hypothetical proteinBLASTP
168661816882521635hypothetical proteinBLASTP
16888661689558693hypothetical protein
16898051690551747hypothetical proteinBLASTP
169056016926352076lipoproteinQuickGO ontologyBLASTP
16927731693477705lipoproteinQuickGO ontologyBLASTP
16934921693668177rubredoxin-type FeCys4 proteinQuickGO ontologyBLASTP
16938351694557723hypothetical protein
16945761695565990hypothetical proteinBLASTP
16956291696459831hypothetical proteinBLASTP
169652516979821458carbon starvation protein CstAQuickGO ontologyBLASTP
169809516994141320aspartate kinaseQuickGO ontologyBLASTP
16996861700639954Fis family sigma-54 specific transcriptional regulatorQuickGO ontologyBLASTP
17006361701550915hypothetical proteinBLASTP
170165617031641509phosphoglucomutasephosphomannomutase alphabetaalpha domain IQuickGO ontologyBLASTP