Pre_GI: BLASTP Hits

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Query: NC_008268:361424:362762 Rhodococcus sp. RHA1, complete genome

Start: 362762, End: 363676, Length: 915

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007333:1743890:177640517764051777208804Thermobifida fusca YX, complete genomeAP endonuclease, family 1:Exodeoxyribonuclease III xth2e-51203
NC_018524:4848154:486814548681454868945801Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeexodeoxyribonuclease III1e-46186
NC_014210:2597000:262021626202162621019804Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,exodeoxyribonuclease III Xth2e-44179
NC_014550:786692:786692786692787531840Arthrobacter arilaitensis Re117, complete genomeexodeoxyribonuclease III3e-44178
NC_013159:502928:506749506749507546798Saccharomonospora viridis DSM 43017, complete genomeexodeoxyribonuclease III2e-43176
NC_014644:1275038:129492512949251295797873Gardnerella vaginalis ATCC 14019 chromosome, complete genomeexodeoxyribonuclease III2e-38159
NC_017514:96911:114661114661115440780Neisseria meningitidis M01-240149 chromosome, complete genomeexodeoxyribonuclease III3e-38159
NC_013721:533048:536269536269537135867Gardnerella vaginalis 409-05, complete genomeputative exodeoxyribonuclease III5e-37154
NC_014125:766576:787521787521788303783Legionella pneumophila 2300/99 Alcoy chromosome, complete genomeexodeoxyribonuclease III6e-33141
NC_009494:775676:801482801482802264783Legionella pneumophila str. Corby chromosome, complete genomeexodeoxyribonuclease III6e-33141
NC_006368:750356:778490778490779272783Legionella pneumophila str. Paris, complete genomehypothetical protein6e-33141
NC_006369:734080:764146764146764928783Legionella pneumophila str. Lens, complete genomehypothetical protein6e-33141
NC_002942:675829:696023696023696805783Legionella pneumophila subsp. pneumophila str. Philadelphia 1,exodeoxyribonuclease III9e-33140
NC_018748:1916012:193214919321491932910762Emticicia oligotrophica DSM 17448 chromosome, complete genomeexodeoxyribonuclease III Xth5e-28125
NC_004556:151593:163969163969164769801Xylella fastidiosa Temecula1, complete genomeexodeoxyribonuclease3e-28125
NC_010577:151926:163901163901164701801Xylella fastidiosa M23, complete genomeexodeoxyribonuclease III Xth3e-28125
NC_003919:4568892:458857845885784589378801Xanthomonas axonopodis pv. citri str. 306, complete genomeexodeoxyribonuclease III2e-27122
NC_007508:4593446:461308346130834613883801Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeexodeoxyribonuclease III7e-27121
NC_010717:4851000:486991348699134870713801Xanthomonas oryzae pv. oryzae PXO99A, complete genomeexodeoxyribonuclease III3e-26119
NC_015152:1230995:125228512522851253037753Spirochaeta sp. Buddy chromosome, complete genomeexodeoxyribonuclease III Xth1e-24114
NC_014532:3967463:396824739682473969014768Halomonas elongata DSM 2581, complete genomeexodeoxyribonuclease III Xth5e-24111
NC_003454:677699:684567684567685328762Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeExodeoxyribonuclease III3e-23109
NC_014655:2874640:289134628913462892110765Leadbetterella byssophila DSM 17132 chromosome, complete genomeexodeoxyribonuclease iii xth1e-22107
NC_016630:1890917:190549619054961906251756Filifactor alocis ATCC 35896 chromosome, complete genomeexodeoxyribonuclease III3e-21102
UCMB5137:3660165:368662836866283687386759Bacillus atrophaeus UCMB-5137exodeoxyribonuclease III1e-20100
NC_013416:1621469:162693016269301627733804Aggregatibacter actinomycetemcomitans D11S-1, complete genomeexodeoxyribonuclease III1e-20100
NC_016513:1958500:196302519630251963861837Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeDNase2e-2099.8
NC_008255:4043045:404553440455344046298765Cytophaga hutchinsonii ATCC 33406, complete genomeexodeoxyribonuclease III2e-2099.8
NC_012913:626449:644021644021644824804Aggregatibacter aphrophilus NJ8700, complete genomeexodeoxyribonuclease III4e-2099
NC_015164:3144745:314738731473873148142756Bacteroides salanitronis DSM 18170 chromosome, complete genomeexodeoxyribonuclease III Xth5e-2098.6
NC_009922:2487492:248949824894982490256759Alkaliphilus oremlandii OhILAs, complete genomeexodeoxyribonuclease III Xth6e-2098.2
NC_012668:1623350:162670816267081627514807Vibrio cholerae MJ-1236 chromosome 1, complete sequenceexonuclease III8e-2097.8
NC_018939:1583653:160504716050471605799753Helicobacter pylori 26695 chromosome, complete genomeexodeoxyribonuclease III3e-1996.3
NC_000915:1583967:160502416050241605776753Helicobacter pylori 26695, complete genomeexodeoxyribonuclease (lexA)3e-1996.3
NC_015224:2618192:263238326323832633189807Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,exonuclease III3e-1995.9
NC_017371:1601452:162263216226321623384753Helicobacter pylori Gambia94/24 chromosome, complete genomeexodeoxyribonuclease III4e-1995.5
NC_008800:2448583:246308624630862463892807Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,exonuclease III4e-1995.5
NC_014019:2661000:267609026760902676851762Bacillus megaterium QM B1551 chromosome, complete genomeexodeoxyribonuclease III1e-1894.4
NC_017354:1465925:148268714826871483439753Helicobacter pylori 52 chromosome, complete genomeexodeoxyribonuclease1e-1894.4
NC_011498:1571840:159009615900961590848753Helicobacter pylori P12, complete genomeexodeoxyribonuclease1e-1894
NC_017365:1466500:148637514863751487127753Helicobacter pylori F30, complete genomeexodeoxyribonuclease1e-1894
NC_017367:1505780:152530515253051526057753Helicobacter pylori F57, complete genomeexodeoxyribonuclease2e-1893.2
NC_011726:1023690:104356010435601044348789Cyanothece sp. PCC 8801, complete genomeexodeoxyribonuclease III2e-1893.2
NC_013161:1023716:104358610435861044374789Cyanothece sp. PCC 8802, complete genomeexodeoxyribonuclease III2e-1893.2
NC_007645:6461267:647900264790026479775774Hahella chejuensis KCTC 2396, complete genomeExonuclease III2e-1893.2
NC_014103:2635695:265549526554952656256762Bacillus megaterium DSM319 chromosome, complete genomeexodeoxyribonuclease III2e-1893.2
NC_017378:1489818:151078615107861511538753Helicobacter pylori Puno120 chromosome, complete genomeexodeoxyribonuclease III2e-1892.8
NC_013769:87582:883878838789130744Sulfolobus islandicus L.D.8.5 chromosome, complete genomeexodeoxyribonuclease III Xth3e-1892.4
NC_012589:87592:883828838289125744Sulfolobus islandicus L.S.2.15, complete genomeexodeoxyribonuclease III Xth3e-1892.4
NC_017276:85380:882298822988972744Sulfolobus islandicus REY15A chromosome, complete genomeexodeoxyribonuclease III Xth4e-1892.4
NC_006155:2461262:246507924650792465885807Yersinia pseudotuberculosis IP 32953, complete genomeexodeoxyribonuclease III4e-1892
NC_005810:2180303:218692421869242187730807Yersinia pestis biovar Microtus str. 91001, complete genomeexonuclease III4e-1892
NC_004088:2366000:238160923816092382424816Yersinia pestis KIM, complete genomeexonuclease III4e-1892
NC_012632:87590:883808838089123744Sulfolobus islandicus M.16.27 chromosome, complete genomeexodeoxyribonuclease III Xth5e-1892
NC_012588:87592:883828838289125744Sulfolobus islandicus M.14.25 chromosome, complete genomeexodeoxyribonuclease III Xth5e-1892
NC_010159:2440947:245373324537332454539807Yersinia pestis Angola, complete genomeexodeoxyribonuclease III4e-1892
NC_010634:2376245:238287623828762383682807Yersinia pseudotuberculosis PB1/+, complete genomeexodeoxyribonuclease III4e-1892
NC_017265:2087487:210331521033152104121807Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,exonuclease III4e-1892
NC_017154:2430093:243468624346862435492807Yersinia pestis D106004 chromosome, complete genomeexodeoxyribonuclease III4e-1892
NC_003143:2433190:243778324377832438589807Yersinia pestis CO92, complete genomeexodeoxyribonuclease III4e-1892
NC_008150:1705152:170974517097451710551807Yersinia pestis Antiqua, complete genomeexodeoxyribonuclease III4e-1892
NC_008149:1842500:184639718463971847203807Yersinia pestis Nepal516, complete genomeexodeoxyribonuclease III4e-1892
NC_014555:1477934:149470014947001495452753Helicobacter pylori PeCan4 chromosome, complete genomeexodeoxyribonuclease III6e-1891.7
NC_009832:2969376:299188629918862992692807Serratia proteamaculans 568, complete genomeexodeoxyribonuclease III7e-1891.3
NC_004193:375416:545279545279546088810Oceanobacillus iheyensis HTE831, complete genomeexodeoxyribonuclease3e-1789.4
NC_014306:2703544:272386327238632724681819Erwinia billingiae Eb661, complete genomeExodeoxyribonuclease III3e-1789
NC_013421:2453078:245928524592852460103819Pectobacterium wasabiae WPP163, complete genomeexodeoxyribonuclease III5e-1788.6
NC_015958:2251619:225364922536492254422774Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeexodeoxyribonuclease III Xth7e-1788.2
NC_013205:2332174:233217423321742332932759Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,exodeoxyribonuclease III Xth1e-1687.4
NC_014834:2264108:229255922925592293329771Rhodopseudomonas palustris DX-1 chromosome, complete genomeexodeoxyribonuclease III Xth1e-1687.4
NC_020244:4020315:404357340435734044331759Bacillus subtilis XF-1, complete genomeapurinic/apyrimidinic endonuclease1e-1687
NC_003306:22228:472264722648002777Agrobacterium tumefaciens str. C58 plasmid AT, complete sequenceexodeoxyribonuclease III4e-1685.9
NC_003064:22535:475334753348309777Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein4e-1685.9
NC_015437:767572:789421789421790173753Selenomonas sputigena ATCC 35185 chromosome, complete genomeexodeoxyribonuclease III3e-1685.9
NC_019842:3921424:394240039424003943158759Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,ExoA protein8e-1684.7
NC_017191:3901914:392027239202723921030759Bacillus amyloliquefaciens XH7 chromosome, complete genome5'3'-exonuclease1e-1583.6
NC_017188:3900951:391858039185803919338759Bacillus amyloliquefaciens TA208 chromosome, complete genomeapurinic/apyrimidinic endonuclease1e-1583.6
NC_005955:947500:971373971373972155783Bartonella quintana str. Toulouse, complete genomeExodeoxyribonuclease III1e-1583.6
NC_009725:3878862:389963238996323900390759Bacillus amyloliquefaciens FZB42, complete genomeExoA2e-1583.2
NC_015389:2030154:202931620293162030167852Coriobacterium glomerans PW2 chromosome, complete genomeexodeoxyribonuclease III Xth4e-1582.4
NC_020410:3868573:389133438913343892092759Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeapurinic/apyrimidinic endonuclease5e-1582
NC_015589:2941953:295568529556852956482798Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeexodeoxyribonuclease III5e-1582
NC_016147:2820232:282232828223282823134807Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeexodeoxyribonuclease III1e-1480.5
NC_013131:5226919:524525152452515246036786Catenulispora acidiphila DSM 44928, complete genomeexodeoxyribonuclease III Xth2e-1479.7
NC_008699:1132790:113765911376591138447789Nocardioides sp. JS614, complete genomeexodeoxyribonuclease III Xth3e-1376.3
NC_010161:1598000:161246316124631613245783Bartonella tribocorum CIP 105476, complete genomeexodeoxyribonuclease III5e-1375.1
NC_019791:99793:113871113871114608738Caldisphaera lagunensis DSM 15908 chromosome, complete genomeexodeoxyribonuclease III1e-1273.9
NC_016111:5181475:520072452007245201512789Streptomyces cattleya NRRL 8057, complete genomeexonuclease3e-1272.8
NC_002689:46243:474644746448222759Thermoplasma volcanium GSS1, complete genomeExonuclease III5e-1272
NC_014363:114239:114239114239115030792Olsenella uli DSM 7084 chromosome, complete genomeexodeoxyribonuclease III Xth8e-1271.2
NC_015602:1810500:181090618109061811733828Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeexodeoxyribonuclease III8e-1271.2
NC_018528:65000:652966529666123828Lactobacillus helveticus R0052 chromosome, complete genomeExodeoxyribonuclease A1e-1170.5
NC_014815:2363460:238021323802132381010798Micromonospora sp. L5 chromosome, complete genomeexodeoxyribonuclease iii xth2e-1170.1
NC_010080:69000:693866938670213828Lactobacillus helveticus DPC 4571, complete genomeExodeoxyribonuclease A5e-1168.6
NC_006814:51500:516875168752523837Lactobacillus acidophilus NCFM, complete genomeexodeoxyribonuclease A6e-1168.2
NC_015214:48999:489994899949826828Lactobacillus acidophilus 30SC chromosome, complete genomeExodeoxyribonuclease III1e-1067.4
NC_021177:6954675:695733069573306958109780Streptomyces fulvissimus DSM 40593, complete genomeExonuclease2e-1067
NC_015558:1425271:145195214519521452779828Streptococcus parauberis KCTC 11537 chromosome, complete genomeputative 3'-exo-deoxyribonuclease2e-0860.1
NC_014664:2373451:239334623933462394152807Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeexodeoxyribonuclease III Xth3e-0859.7
NC_009712:334143:340785340785341594810Candidatus Methanoregula boonei 6A8, complete genomeexodeoxyribonuclease III Xth3e-0859.3
NC_009484:464342:468480468480469283804Acidiphilium cryptum JF-5 chromosome, complete genomeexodeoxyribonuclease III Xth3e-0756.2
NC_015186:573289:577427577427578230804Acidiphilium multivorum AIU301, complete genomeexodeoxyribonuclease III4e-0755.5