Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:1623350 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
16233501624120771arginineornithine ABC transporter ATP-binding protein AotPQuickGO ontologyBLASTP
16242991625081783amino acid ABC transporter substrate-binding proteinQuickGO ontologyBLASTP
16251871625969783arginineornithine ABC transporter permease protein AotQQuickGO ontologyBLASTP
16259721626649678amino acid ABC transporter permeaseQuickGO ontologyBLASTP
16267081627514807exonuclease IIIQuickGO ontologyBLASTP
162785716294821626hypothetical proteinBLASTP
162948216313261845hypothetical proteinBLASTP
163132316333502028hypothetical proteinBLASTP
16333681633862495hypothetical proteinBLASTP
163450316358101308hypothetical proteinBLASTP
16360691636965897hypothetical proteinBLASTP
163718716409693783type I site-specific deoxyribonuclease HsdR familyQuickGO ontologyBLASTP
164097316422471275hypothetical proteinBLASTP
164223116438231593type I restriction-modification system DNA-methyltransferase subunit MQuickGO ontologyBLASTP
16439281644137210hypothetical proteinBLASTP
16442441644783540hypothetical proteinBLASTP
164477316460921320HipA proteinQuickGO ontologyBLASTP
16465131646869357hypothetical proteinBLASTP
16471361647276141hypothetical proteinBLASTP
164743816495582121methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
16495821649794213hypothetical protein
16497951650358564primosomal replication protein NQuickGO ontologyBLASTP
16503431651119777hypothetical proteinBLASTP
165116016532352076ATP-dependent DNA helicase DinGQuickGO ontologyBLASTP
165374516547791035outer membrane protein OmpTQuickGO ontology