Pre_GI: OUP Neighbours

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Query: NC_013717:5726 Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence

D: 25.079

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.

Number of Neighbours: 100




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
CP002797:4656327Escherichia coli NA114, complete genome77.8339 %Subject ←→ Query26.8361
NC_008258:2045000*Shigella flexneri 5 str. 8401, complete genome75.579 %Subject ←→ Query27.7177
NC_011740:1991941*Escherichia fergusonii ATCC 35469, complete genome76.2531 %Subject ←→ Query27.7754
NC_011750:1094000Escherichia coli IAI39 chromosome, complete genome76.1612 %Subject ←→ Query28.554
NC_011740:1831845Escherichia fergusonii ATCC 35469, complete genome76.2439 %Subject ←→ Query28.5567
CP002797:2472908Escherichia coli NA114, complete genome75.1593 %Subject ←→ Query29.1859
NC_010498:1117938Escherichia coli SMS-3-5, complete genome76.8658 %Subject ←→ Query29.8896
NC_011740:2737467Escherichia fergusonii ATCC 35469, complete genome75.6648 %Subject ←→ Query30.2078
CP002797:4603787*Escherichia coli NA114, complete genome78.3058 %Subject ←→ Query30.3309
NC_007613:1038000Shigella boydii Sb227, complete genome78.174 %Subject ←→ Query30.5697
NC_007384:3383983Shigella sonnei Ss046, complete genome76.3051 %Subject ←→ Query30.7059
NC_009800:349592*Escherichia coli HS, complete genome77.9381 %Subject ←→ Query30.8783
NC_002655:1103991Escherichia coli O157:H7 EDL933, complete genome81.9914 %Subject ←→ Query31.019
NC_002695:1417912Escherichia coli O157:H7 str. Sakai, complete genome80.1317 %Subject ←→ Query31.3382
NC_008563:2041345Escherichia coli APEC O1, complete genome75.3002 %Subject ←→ Query31.3432
AP010958:2455052*Escherichia coli O103:H2 str. 12009 DNA, complete genome77.3376 %Subject ←→ Query31.4202
NC_011740:1595381Escherichia fergusonii ATCC 35469, complete genome75.0429 %Subject ←→ Query31.6589
NC_011748:4792703*Escherichia coli 55989, complete genome75.386 %Subject ←→ Query31.6938
CU928145:4792703*Escherichia coli 55989 chromosome, complete genome75.386 %Subject ←→ Query31.6938
CP002797:2062006*Escherichia coli NA114, complete genome78.6428 %Subject ←→ Query31.7624
NC_008253:3122148*Escherichia coli 536, complete genome81.3695 %Subject ←→ Query32.0871
NC_008563:4707826Escherichia coli APEC O1, complete genome75.0184 %Subject ←→ Query32.3018
NC_011750:3545466*Escherichia coli IAI39 chromosome, complete genome80.0888 %Subject ←→ Query32.5632
NC_004741:2009769Shigella flexneri 2a str. 2457T, complete genome75.9007 %Subject ←→ Query32.5875
NC_008253:4735418Escherichia coli 536, complete genome80.3248 %Subject ←→ Query32.6562
NC_011750:4947500*Escherichia coli IAI39 chromosome, complete genome77.4969 %Subject ←→ Query32.9361
NC_010102:2762304Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.4442 %Subject ←→ Query33.1712
NC_011750:1978801Escherichia coli IAI39 chromosome, complete genome76.2561 %Subject ←→ Query33.1799
NC_007613:4403070Shigella boydii Sb227, complete genome75.095 %Subject ←→ Query33.2307
NC_006511:1063249Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.3186 %Subject ←→ Query33.2411
NC_008253:4817864Escherichia coli 536, complete genome77.546 %Subject ←→ Query33.3548
NC_007946:4875997Escherichia coli UTI89, complete genome78.0729 %Subject ←→ Query33.512
NC_011750:4390000Escherichia coli IAI39 chromosome, complete genome77.8033 %Subject ←→ Query33.521
NC_004741:3041294*Shigella flexneri 2a str. 2457T, complete genome75.6832 %Subject ←→ Query33.6878
NC_002695:2655445Escherichia coli O157:H7 str. Sakai, complete genome75.0061 %Subject ←→ Query34.1082
NC_010498:2278306Escherichia coli SMS-3-5, complete genome75.7476 %Subject ←→ Query34.2186
NC_008253:334467*Escherichia coli 536, complete genome81.6238 %Subject ←→ Query34.2564
NC_007946:4779745Escherichia coli UTI89, complete genome82.4939 %Subject ←→ Query34.3298
NC_010658:1933605*Shigella boydii CDC 3083-94, complete genome76.3848 %Subject ←→ Query34.3978
NC_007941:11319Escherichia coli UTI89 plasmid pUTI89, complete sequence76.7984 %Subject ←→ Query34.4019
CU928145:1408280*Escherichia coli 55989 chromosome, complete genome75.7812 %Subject ←→ Query34.5817
NC_011748:1408280*Escherichia coli 55989, complete genome75.7812 %Subject ←→ Query34.5817
NC_004431:364000*Escherichia coli CFT073, complete genome75.6832 %Subject ←→ Query34.6588
NC_011083:338910Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.4351 %Subject ←→ Query34.6863
NC_004431:324000Escherichia coli CFT073, complete genome82.0711 %Subject ←→ Query34.8012
NC_009801:4882684Escherichia coli E24377A, complete genome75.4197 %Subject ← Query35.1675
NC_013421:701005Pectobacterium wasabiae WPP163, complete genome75.1226 %Subject ← Query35.2447
NC_008253:296500Escherichia coli 536, complete genome83.8235 %Subject ← Query35.2505
NC_010488:48868Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence75.7506 %Subject ← Query35.6499
NC_011750:4775770Escherichia coli IAI39 chromosome, complete genome81.5411 %Subject ← Query35.7604
NC_010498:2555706Escherichia coli SMS-3-5, complete genome78.4988 %Subject ← Query35.8686
NC_002695:1794635Escherichia coli O157:H7 str. Sakai, complete genome77.1538 %Subject ← Query35.9924
NC_011083:4547825Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.3358 %Subject ← Query36.0169
NC_010102:931055Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.1838 %Subject ← Query36.259
NC_008563:3332114Escherichia coli APEC O1, complete genome78.8235 %Subject ← Query36.3496
NC_004431:2747237Escherichia coli CFT073, complete genome79.3199 %Subject ← Query36.3806
NC_009786:43331Escherichia coli E24377A plasmid pETEC_80, complete sequence75.4412 %Subject ← Query36.4529
NC_004631:2615908Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.5294 %Subject ← Query36.5722
NC_008253:3941938*Escherichia coli 536, complete genome81.2837 %Subject ← Query36.7085
NC_002695:3468873*Escherichia coli O157:H7 str. Sakai, complete genome75.2482 %Subject ← Query36.813
CP002797:4775780Escherichia coli NA114, complete genome81.4277 %Subject ← Query37.0319
NC_006511:2540500Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC79.5772 %Subject ← Query37.0863
NC_004431:1211000*Escherichia coli CFT073, complete genome81.7249 %Subject ← Query37.0893
NC_002655:1448605Escherichia coli O157:H7 EDL933, complete genome77.1507 %Subject ← Query37.1546
NC_004431:1166568Escherichia coli CFT073, complete genome83.5938 %Subject ← Query37.2232
NC_006905:326517Salmonella enterica subsp. enterica serovar Choleraesuis str76.9792 %Subject ← Query37.465
NC_004431:3409389*Escherichia coli CFT073, complete genome83.3425 %Subject ← Query37.4762
NC_002695:1364833Escherichia coli O157:H7 str. Sakai, complete genome76.7524 %Subject ← Query37.7023
NC_011751:3453683Escherichia coli UMN026 chromosome, complete genome83.1801 %Subject ← Query37.7715
NC_008253:3161311Escherichia coli 536, complete genome78.2169 %Subject ← Query37.787
NC_002655:1053082Escherichia coli O157:H7 EDL933, complete genome78.8542 %Subject ← Query37.8144
NC_007946:1119000*Escherichia coli UTI89, complete genome81.8842 %Subject ← Query37.8204
AP010958:3853082*Escherichia coli O103:H2 str. 12009 DNA, complete genome77.4357 %Subject ← Query37.9582
NC_007946:1073135Escherichia coli UTI89, complete genome75.1562 %Subject ← Query38.0761
AP010958:2272919Escherichia coli O103:H2 str. 12009 DNA, complete genome75.0613 %Subject ← Query38.2003
NC_011149:309556Salmonella enterica subsp. enterica serovar Agona str. SL483,75.046 %Subject ← Query38.5236
NC_002655:3919545Escherichia coli O157:H7 EDL933, complete genome76.3542 %Subject ← Query39.1881
NC_014228:1712339*Xenorhabdus nematophila ATCC 19061, complete genome75.1103 %Subject ← Query39.3595
NC_004431:279868Escherichia coli CFT073, complete genome84.231 %Subject ← Query39.5292
NC_009788:16360Escherichia coli E24377A plasmid pETEC_73, complete sequence77.6103 %Subject ← Query39.7806
NC_010554:2872000Proteus mirabilis HI4320, complete genome76.6513 %Subject ← Query40.1143
NC_002695:3852233Escherichia coli O157:H7 str. Sakai, complete genome76.394 %Subject ← Query40.3549
NC_010067:2304313*Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.9902 %Subject ← Query40.6544
NC_002128:35000Escherichia coli O157:H7 str. Sakai plasmid pO157, complete76.4277 %Subject ← Query41.037
NC_002695:1571389Escherichia coli O157:H7 str. Sakai, complete genome77.2181 %Subject ← Query41.3174
NC_002655:1655944Escherichia coli O157:H7 EDL933, complete genome77.5521 %Subject ← Query41.582
NC_007414:56508Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequence76.5349 %Subject ← Query42.1367
NC_015567:346500Serratia sp. AS9 chromosome, complete genome75.2574 %Subject ← Query42.2995
NC_009790:42112Escherichia coli E24377A plasmid pETEC_74, complete sequence81.3419 %Subject ← Query42.3754
AP010958:3669500Escherichia coli O103:H2 str. 12009 DNA, complete genome75.4442 %Subject ← Query42.6045
NC_013716:5201097*Citrobacter rodentium ICC168, complete genome75.3676 %Subject ← Query42.6129
AP010958:1305712Escherichia coli O103:H2 str. 12009 DNA, complete genome76.1887 %Subject ← Query42.7374
NC_011748:3360967*Escherichia coli 55989, complete genome81.0049 %Subject ← Query42.7659
CU928145:3360967*Escherichia coli 55989 chromosome, complete genome81.0049 %Subject ← Query42.7659
AP010958:5090696*Escherichia coli O103:H2 str. 12009 DNA, complete genome78.5294 %Subject ← Query42.8493
AP010958:3627355Escherichia coli O103:H2 str. 12009 DNA, complete genome79.2831 %Subject ← Query43.1575
NC_015566:345084Serratia sp. AS12 chromosome, complete genome75.5453 %Subject ← Query43.9354
NC_013716:3327881Citrobacter rodentium ICC168, complete genome75.5699 %Subject ← Query44.6889
NC_004851:191709Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence77.9381 %Subject ← Query44.8472
NC_015963:4500Enterobacter asburiae LF7a plasmid pENTAS01, complete sequence77.3131 %Subject ← Query47.8868