Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:349592 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3495923521892598hypothetical proteinBLASTP
3522003542842085hypothetical proteinBLASTP
354549354974426hypothetical proteinBLASTP
354971355354384hypothetical proteinBLASTP
355623355739117hypothetical protein
355726356325600hypothetical proteinBLASTP
356879357157279ISEhe3 transposase orfAQuickGO ontologyBLASTP
357214358026813ISEhe3 transposase orfBQuickGO ontologyBLASTP
358203358793591fimbrillin MatAQuickGO ontologyBLASTP
359830359970141ribosomal protein L36QuickGO ontologyBLASTP
359970360233264ribosomal protein L31QuickGO ontologyBLASTP
3618143660674254putative intiminQuickGO ontologyBLASTP
366188367045858transcriptional regulator AraC familyQuickGO ontologyBLASTP
367294368163870oxidoreductase aldoketo reductase familyQuickGO ontologyBLASTP
368323368916594hypothetical proteinBLASTP
368899369168270hypothetical proteinBLASTP
3692733705981326pyridine nucleotide-disulphide oxidoreductaseQuickGO ontologyBLASTP
37067837077093hypothetical protein
370824371678855transcriptional regulator AraC familyQuickGO ontologyBLASTP
372205372924720cysteine-rich domain proteinQuickGO ontologyBLASTP
3729353743621428iron-sulfur cluster binding proteinQuickGO ontologyBLASTP
374355375050696hypothetical proteinBLASTP
375293375961669hypothetical proteinBLASTP
3761243784212298putative outer membrane autotransporterQuickGO ontologyBLASTP
378463379224762hypothetical proteinBLASTP
379378380172795HTH luxR-type DNA-binding domain proteinQuickGO ontologyBLASTP