Pre_GI: BLASTP Hits

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Query: NC_010660:33109:44637 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 44637, End: 45026, Length: 390

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:86445:950599505995448390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf19e-62234
NC_009790:42112:671896718967578390Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element3e-61233
NC_009801:1392696:140961714096171410006390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-61233
NC_009801:1756610:176096717609671761356390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-61233
NC_009801:2898426:294035029403502940739390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-61233
NC_009788:16360:182921829218681390Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS66 family element, orf13e-61233
NC_002655:2264773:227763922776392278040402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc83e-61233
NC_004431:3409389:342716934271693427570402Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage3e-61233
NC_002695:4584177:458605945860594586460402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-61233
NC_013361:1284579:130444313044431304844402Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-61233
NC_013353:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-61233
NC_013008:1307392:132773213277321328133402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-61233
NC_011745:333061:335652335652336053402Escherichia coli ED1a chromosome, complete genomeputative transposase, IS3 family3e-61233
NC_002655:4653160:465504246550424655443402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc8 within prophage CP-933L3e-61233
AP010958:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-61233
NC_013008:3525428:354178635417863542187402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-60230
NC_013008:1715831:172970317297031730104402Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase2e-60230
NC_002695:1364833:138386013838601384261402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-60230
NC_016822:2940000:295990729599072960308402Shigella sonnei 53G, complete genomehypothetical protein7e-60228
NC_013008:4643825:464522546452254645605381Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase, ISEc83e-59226
NC_002695:1794635:180913718091371809517381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-59226
NC_002695:3468873:348280134828013483181381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-59226
NC_016822:2940000:294140529414052941602198Shigella sonnei 53G, complete genomehypothetical protein2e-29127
NC_016845:2274500:229580922958092296213405Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein8e-28122
NC_004431:3409389:341047334104733410877405Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage9e-28122
NC_007941:11319:331303313033534405Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein9e-28122
NC_011353:4688000:468940346894034689564162Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family element, orf11e-23108
NC_011353:1307106:132744613274461327607162Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family element, orf11e-23108
NC_011353:3956630:397290539729053973864960Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-1890.9
NC_009801:1756610:175854817585481759012465Escherichia coli E24377A, complete genomeIS66 family element, orf17e-1682.4
NC_013361:3867558:389845438984543898939486Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein8e-1682.4
NC_013716:2476334:248499424849942485671678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:3708415:372254337225433723220678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:1138441:114611011461101146787678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:4824541:483553548355354836212678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:2764550:279093027909302791607678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:4306695:431035743103574311034678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:3327881:335750833575083358185678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_013716:2764550:279183027918302792507678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1582
NC_009790:42112:442404424044917678Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, orf19e-1682
NC_009801:3374501:338814533881453388822678Escherichia coli E24377A, complete genomeIS66 family element, orf19e-1682
NC_013361:3313284:331480333148033315450648Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein9e-1682
NC_007651:3064530:314390831439083144315408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_007651:1620000:162740116274011627808408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_007651:3560652:358535335853533585760408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_007651:1620000:164485016448501645257408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_007651:3064530:307232730723273072734408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_007651:72952:833758337583782408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_007651:1620000:163739216373921637799408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein2e-1478.2
NC_009254:745706:763090763090763524435Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein6e-1476.3
NC_009255:1105786:111509111150911115525435Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase IS3/IS911 family protein6e-1476.3
NC_009256:2907998:291244329124432912877435Burkholderia vietnamiensis G4 chromosome 1, complete sequencetransposase IS3/IS911 family protein6e-1476.3
NC_014539:888562:893145893145893561417Burkholderia sp. CCGE1003 chromosome 1, complete sequencetransposase IS3/IS911 family protein1e-1375.5
NC_009254:442360:460991460991461386396Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein1e-1374.7
NC_007951:4576825:458212245821224582559438Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase2e-1374.3
NC_013716:5201097:526588652658865266536651Citrobacter rodentium ICC168, complete genomeIS679 transposase A6e-1372.8
NC_014839:68308:881018810188736636Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetransposase IS3/IS911 family protein8e-1372.4
NC_011002:703194:719199719199719606408Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative transposase1e-1272
NC_009078:2718741:275026927502692750664396Burkholderia pseudomallei 1106a chromosome II, complete sequenceTransposase2e-1270.9
NC_007435:1446916:147844414784441478839396Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein1e-1168.2
NC_014228:2270000:229328422932842293916633Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase3e-1063.9
CP002797:4603787:462158746215874622012426Escherichia coli NA114, complete genomeIS-66 transposase6e-1062.8
NC_010660:33109:376623766238081420Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf18e-1062.4
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase2e-0961.6
NC_007385:157516:161897161897162565669Shigella sonnei Ss046 plasmid pSS_046, complete sequenceputative transposase2e-0961.6
NC_011748:4792703:479270347927034793128426Escherichia coli 55989, complete genomeputative transposase OrfA from plasmid origin2e-0961.2
CU928145:4792703:479270347927034793128426Escherichia coli 55989 chromosome, complete genomeputative transposase OrfA from plasmid origin2e-0961.2
NC_011601:3338888:336418933641893364614426Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6823e-0960.5
NC_013941:3676146:370144037014403701865426Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein4e-0960.1
NC_013353:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-0960.1
NC_013353:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-0960.1
AP010958:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-0960.1
AP010958:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-0960.1
NC_009254:74000:939439394394362420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein5e-0959.7
NC_009254:637952:644979644979645398420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein6e-0959.3
NC_007510:1959883:200343920034392003855417Burkholderia sp. 383 chromosome 1, complete sequencetransposase IS3/IS9117e-0959.3
NC_005241:157741:157424157424157744321Ralstonia eutropha H16 megaplasmid pHG1, complete sequencetransposition-related protein1e-0858.5
NC_014394:2577949:259843525984352598797363Gallionella capsiferriformans ES-2 chromosome, complete genometransposase IS3/IS911 family protein1e-0858.2
NC_011745:4862218:486790848679084868333426Escherichia coli ED1a chromosome, complete genomeputative transposase6e-0856.2
NC_014910:1591003:159744815974481597876429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein1e-0755.5
NC_015422:2858228:291509529150952915523429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein1e-0755.5
NC_014910:1912552:192794719279471928375429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein1e-0755.5
NC_015422:3184823:319825931982593198687429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein1e-0755.5
CU928159:30700:331343313433571438Escherichia coli str. 55989 plasmid 55989p, complete genomeconserved hypothetical protein, putative transposase IS3 family1e-0755.5
NC_011751:3453683:347806134780613478498438Escherichia coli UMN026 chromosome, complete genomeputative transposase1e-0755.5
NC_004431:3409389:345496234549623455399438Escherichia coli CFT073, complete genomeUnknown in putative ISEc81e-0755.5
AP010958:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-0755.1
AP010958:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein1e-0755.1
NC_011601:3338888:334114433411443341818675Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6831e-0755.1
NC_013353:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-0755.1
NC_013353:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein1e-0755.1
NC_015572:1252000:125556412555641255971408Methylomonas methanica MC09 chromosome, complete genometransposase IS3/IS911 family protein2e-0754.3
NC_013008:3911356:391361239136123914286675Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-0754.3
NC_011353:3956630:395888639588863959560675Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeISSfl4 ORF12e-0754.3
NC_002695:3852233:385448938544893855163675Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0754.3
NC_002655:3919545:392180139218013922475675Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc82e-0754.3
NC_011751:3453683:350329135032913503716426Escherichia coli UMN026 chromosome, complete genomeputative transposase6e-0753.1
NC_013941:3676146:367840236784023679076675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeISSfl3 OrfA7e-0752.8
NC_007946:4779745:481483048148304815192363Escherichia coli UTI89, complete genomehypothetical protein8e-0752.4
NC_004741:366822:385926385926386423498Shigella flexneri 2a str. 2457T, complete genomeISSfl3 orfA2e-0651.2
NC_003047:3360000:336349033634903363951462Sinorhizobium meliloti 1021, complete genomehypothetical protein3e-0650.8
NC_008258:401786:423776423776424450675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF13e-0650.8
NC_008258:2045000:205991720599172060591675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF13e-0650.8
NC_004337:367687:386125386125386799675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF13e-0650.8
NC_017319:155958:169634169634170308675Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF13e-0650.8
NC_017328:385552:403989403989404663675Shigella flexneri 2002017 chromosome, complete genomeISSfl4 ORF13e-0650.8
NC_017319:155958:173413173413174042630Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF12e-0650.8
NC_004337:3590323:385190438519043852578675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF12e-0650.8
NC_004851:157675:173438173438174112675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF12e-0650.8
NC_010676:2869936:287185728718572872336480Burkholderia phytofirmans PsJN chromosome 2, complete sequencetransposase IS3/IS911 family protein5e-0650.1
NC_011001:302500:303100303100303495396Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transposase9e-0648.9
NC_011000:1262324:128276612827661283161396Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase9e-0648.9
CP002797:4775780:479493447949344795296363Escherichia coli NA114, complete genomePutative transposase1e-0548.9
NC_004431:3409389:348025334802533480615363Escherichia coli CFT073, complete genomeUnknown in ISEc81e-0548.9