Pre_GI: BLASTN Hits

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Query: NC_009381:1655731 Yersinia pestis Pestoides F chromosome, complete genome

Start: 1655731, End: 1680249, Length: 24519

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010465:28205002820500286978249283Yersinia pseudotuberculosis YPIII, complete genome016480BLASTN svgBLASTP svg
NC_010634:18095001809500182909919600Yersinia pseudotuberculosis PB1/+, complete genome016470BLASTN svgBLASTP svg
NC_006155:18079021807902182857520674Yersinia pseudotuberculosis IP 32953, complete genome016450BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome016410BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome015970BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome015910BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome015910BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome015910BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome013260BLASTN svgBLASTP svg
NC_015224:17031301703130172897125842Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,01818BLASTN svgBLASTP svg
NC_009832:16642381664238169623231995Serratia proteamaculans 568, complete genome0835BLASTN svgBLASTP svg
NC_020064:15014411501441151984318403Serratia marcescens FGI94, complete genome2e-167597BLASTN svgBLASTP svg
NC_020211:1655826*1655826167870522880Serratia marcescens WW4, complete genome3e-148533BLASTN svgBLASTP svg
AP010958:92293792293795098628050Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-120440BLASTN svgBLASTP svg
NC_012917:1923059*1923059194769524637Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-69272BLASTN svgBLASTP svg
NC_014837:37664263766426379523728812Pantoea sp. At-9b chromosome, complete genome5e-45190BLASTN svgBLASTP svg
NC_014121:18228951822895184662423730Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-38167BLASTN svgBLASTP svg
NC_009648:14876921487692151904531354Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-36163BLASTN svgBLASTP svg
NC_009997:2967521*2967521298899221472Shewanella baltica OS195, complete genome1e-33153BLASTN svgBLASTP svg
NC_009648:34760003476000349829422295Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-28135BLASTN svgBLASTP svg
NC_008253:29655732965573298953823966Escherichia coli 536, complete genome9e-28133BLASTN svgBLASTP svg
NC_007946:31255773125577314932023744Escherichia coli UTI89, complete genome4e-27131BLASTN svgBLASTP svg
NC_009778:19562251956225198255126327Enterobacter sakazakii ATCC BAA-894, complete genome4e-24121BLASTN svgBLASTP svg
NC_012691:31265003126500315237825879Tolumonas auensis DSM 9187, complete genome1e-23119BLASTN svgBLASTP svg
NC_009648:2465613*2465613249720831596Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome9e-22113BLASTN svgBLASTP svg
NC_007963:27770662777066279798320918Chromohalobacter salexigens DSM 3043, complete genome3e-21111BLASTN svgBLASTP svg
NC_013282:20260832026083208019854116Cronobacter turicensis, complete genome1e-20109BLASTN svgBLASTP svg
NC_014306:43760124376012441784741836Erwinia billingiae Eb661, complete genome1e-20109BLASTN svgBLASTP svg
NC_015581:771482*77148280463933158Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome8e-19103BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome8e-19103BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome8e-19103BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_010552:59215459215461849626343Burkholderia ambifaria MC40-6 chromosome 2, complete sequence1e-1799.6BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_015410:30034173003417302693723521Pseudomonas mendocina NK-01 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008570:2216736*2216736227194055205Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_020181:10574761057476107717519700Enterobacter aerogenes EA1509E, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004578:1719849*1719849174221722369Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010465:22828742282874230925826385Yersinia pseudotuberculosis YPIII, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015663:43471874347187437073923553Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015062:13035913035915526724909Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence2e-1385.7BLASTN svgBLASTP svg
NC_010465:3431500*3431500345664825149Yersinia pseudotuberculosis YPIII, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010501:35757263575726360509929374Pseudomonas putida W619, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-1281.8BLASTN svgBLASTP svg
NC_015224:88953688953690956920034Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-1179.8BLASTN svgBLASTP svg
NC_009512:31189073118907313838119475Pseudomonas putida F1, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008027:33873663387366341245025085Pseudomonas entomophila L48, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007348:20119572011957203523223276Ralstonia eutropha JMP134 chromosome 2, complete sequence5e-1177.8BLASTN svgBLASTP svg
NC_013959:839928399210878124790Sideroxydans lithotrophicus ES-1 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010634:31291743129174315220423031Yersinia pseudotuberculosis PB1/+, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010465:15506171550617157325522639Yersinia pseudotuberculosis YPIII, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010159:28784992878499290014121643Yersinia pestis Angola, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008150:24518722451872247509923228Yersinia pestis Antiqua, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008149:15565811556581157548818908Yersinia pestis Nepal516, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_005810:29053622905362292838523024Yersinia pestis biovar Microtus str. 91001, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004088:16229411622941164556522625Yersinia pestis KIM, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_003143:33468343346834337009923266Yersinia pestis CO92, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004547:164000*16400019143427435Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010634:2252329*2252329227409821770Yersinia pseudotuberculosis PB1/+, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006155:23341222334122235510620985Yersinia pseudotuberculosis IP 32953, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008700:367949*36794939264724699Shewanella amazonensis SB2B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005810:2180303*2180303220909928797Yersinia pestis biovar Microtus str. 91001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006155:2461262*2461262248869127430Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006155:32127963212796323445221657Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:2376245*2376245240318526941Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012880:2871480*2871480289700125522Dickeya dadantii Ech703, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012912:24270924270927148728779Dickeya zeae Ech1591, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007954:33479533479536212727333Shewanella denitrificans OS217, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015224:3225000*3225000325159926600Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-0661.9BLASTN svgBLASTP svg
NC_012917:26410002641000266615925160Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008150:15436351543635156595322319Yersinia pestis Antiqua, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008149:16699211669921169183421914Yersinia pestis Nepal516, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005810:20437302043730206409920370Yersinia pestis biovar Microtus str. 91001, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004547:2285092*2285092230801122920Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003143:22586362258636227843519800Yersinia pestis CO92, complete genome3e-0661.9BLASTN svgBLASTP svg