Pre_GI Gene

Some Help

Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:1719849 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
17198491720745897transcriptional regulator LysR familyQuickGO ontologyBLASTP
172085017219621113alcohol dehydrogenase class IIIQuickGO ontologyBLASTP
17220621722907846esterase putativeQuickGO ontologyBLASTP
172296117234344742-C-methyl-D-erythritol 24-cyclodiphosphate synthaseQuickGO ontologyBLASTP
172343117244891059tRNA pseudouridine synthase DQuickGO ontologyBLASTP
17244771725226750stationary phase survival protein SurEQuickGO ontologyBLASTP
17252681725903636protein-L-isoaspartate O-methyltransferaseQuickGO ontologyBLASTP
17261091726975867lipoprotein NlpD putativeQuickGO ontologyBLASTP
172708017280871008RNA polymerase sigma factorQuickGO ontologyBLASTP
1728164172826299hypothetical protein
172865017301101461ISPsy6 transposaseQuickGO ontologyBLASTP
17303111731165855type III effector HopAF1QuickGO ontologyBLASTP
17312721731397126PSPTO5620QuickGO ontology
17317201731875156hypothetical protein
173192217334931572hypothetical proteinBLASTP
17337971734111315hypothetical protein
17344881734670183hypothetical proteinBLASTP
173473317360431311mechanosensitive ion channel family proteinQuickGO ontologyBLASTP
17363071736618312hypothetical proteinBLASTP
17366411736997357hypothetical proteinBLASTP
173711417382261113hypothetical proteinBLASTP
17382361739129894transcriptional regulator LysR familyQuickGO ontologyBLASTP
173923617404441209major facilitator family transporterQuickGO ontologyBLASTP
174049317415211029hypothetical proteinBLASTP
17415791742217639hypothetical proteinBLASTP