Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:2285092 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
228509222864051314two component sensor kinaseQuickGO ontologyBLASTP
22864022287139738two-component response regulatorQuickGO ontologyBLASTP
228736122885601200hypothetical proteinBLASTP
22887062289281576hypothetical proteinBLASTP
22893332290136804hypothetical proteinBLASTP
22901332290600468putative RNA polymerase sigma factorQuickGO ontologyBLASTP
22906792291401723short chain dehydrogenaseQuickGO ontologyBLASTP
229185622944142559hypothetical proteinBLASTP
229442422970002577hypothetical proteinBLASTP
229711322988071695putative sulfate transporterQuickGO ontologyBLASTP
229897123000711101putative calciumproton antiporterQuickGO ontologyBLASTP
23000862300208123putative surface antigen proteinQuickGO ontology
23004012301204804putative siderophore-interacting proteinQuickGO ontologyBLASTP
23014752301606132hypothetical protein
23019222302608687putative cation transport proteinQuickGO ontologyBLASTP
230268323037321050hypothetical proteinBLASTP
230402323052971275putative acyltransferaseQuickGO ontologyBLASTP
23055602306210651nitratenitrite response regulatorQuickGO ontologyBLASTP
230620323080111809nitratenitrite sensor kinaseQuickGO ontologyBLASTP