Pre_GI Gene

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Host: NC_010501 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010501:3575726 Pseudomonas putida W619, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
35752093575745537hypothetical proteinBLASTP
357572635768231098type VI secretion protein VC_A0111 familyQuickGO ontologyBLASTP
357678735785561770type VI secretion protein VC_A0110 familyQuickGO ontologyBLASTP
357858035801661587type VI secretion-associated protein VC_A0119 familyQuickGO ontologyBLASTP
358016335835073345ImcF domain proteinQuickGO ontologyBLASTP
358351735847491233hypothetical proteinBLASTP
35847533585016264PAAR repeat-containing proteinQuickGO ontologyBLASTP
35852043585848645hypothetical protein
358583235886272796hypothetical proteinBLASTP
35886573588917261PAAR repeat-containing proteinQuickGO ontologyBLASTP
358939935920682670hypothetical proteinBLASTP
359207435944372364type VI secretion system Vgr family proteinQuickGO ontologyBLASTP
359444035970942655type VI secretion ATPase ClpV1 familyQuickGO ontologyBLASTP
35972443597747504type VI secretion system effector Hcp1 familyQuickGO ontologyBLASTP
359776435994941731OmpAMotB domain proteinQuickGO ontologyBLASTP
35995003600168669hypothetical proteinBLASTP
360017736015321356type VI secretion protein VC_A0114 familyQuickGO ontologyBLASTP
360155636030941539type VI secretion protein EvpBVC_A0108 familyQuickGO ontologyBLASTP
36031293603632504type VI secretion protein VC_A0107 familyQuickGO ontologyBLASTP
36044293604800372IstB domain protein ATP-binding proteinQuickGO ontologyBLASTP