Pre_GI: BLASTN Hits

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Query: NC_004578:2560473 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2560473, End: 2588812, Length: 28340

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004578:21246821246824209929632Pseudomonas syringae pv. tomato str. DC3000, complete genome03897BLASTN svgBLASTP svg
NC_004578:20738207386960648869Pseudomonas syringae pv. tomato str. DC3000, complete genome03897BLASTN svgBLASTP svg
NC_004578:38498353849835387260722773Pseudomonas syringae pv. tomato str. DC3000, complete genome03895BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome03893BLASTN svgBLASTP svg
NC_004578:1190000*1190000121945029451Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_004578:40613724061372409399732626Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_004578:63347356334735636397929245Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_004578:93486793486796406929203Pseudomonas syringae pv. tomato str. DC3000, complete genome03891BLASTN svgBLASTP svg
NC_004632:28470284705186423395Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B,03889BLASTN svgBLASTP svg
NC_004578:5336773*5336773541660879836Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:47813264781326481642335098Pseudomonas syringae pv. tomato str. DC3000, complete genome03889BLASTN svgBLASTP svg
NC_004578:51921105192110522245930350Pseudomonas syringae pv. tomato str. DC3000, complete genome03796BLASTN svgBLASTP svg
NC_004578:60899586089958612236632409Pseudomonas syringae pv. tomato str. DC3000, complete genome02819BLASTN svgBLASTP svg
NC_004578:32416183241618326508823471Pseudomonas syringae pv. tomato str. DC3000, complete genome02329BLASTN svgBLASTP svg
NC_004578:27974932797493281782820336Pseudomonas syringae pv. tomato str. DC3000, complete genome02323BLASTN svgBLASTP svg
NC_004578:4204235*4204235422545421220Pseudomonas syringae pv. tomato str. DC3000, complete genome02321BLASTN svgBLASTP svg
NC_004578:35970833597083362009923017Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:21859072185907220851022604Pseudomonas syringae pv. tomato str. DC3000, complete genome02319BLASTN svgBLASTP svg
NC_004578:26715082671508269955228045Pseudomonas syringae pv. tomato str. DC3000, complete genome02317BLASTN svgBLASTP svg
NC_004578:568236*56823659272224487Pseudomonas syringae pv. tomato str. DC3000, complete genome02313BLASTN svgBLASTP svg
NC_004578:56237835623783565173727955Pseudomonas syringae pv. tomato str. DC3000, complete genome02313BLASTN svgBLASTP svg
NC_004578:4465247*4465247448346018214Pseudomonas syringae pv. tomato str. DC3000, complete genome02313BLASTN svgBLASTP svg
NC_004578:11537381153738117268818951Pseudomonas syringae pv. tomato str. DC3000, complete genome01897BLASTN svgBLASTP svg
NC_005773:5149768*5149768521141661649Pseudomonas syringae pv. phaseolicola 1448A, complete genome0827BLASTN svgBLASTP svg
NC_005773:11353741135374117481539442Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-153549BLASTN svgBLASTP svg
NC_004578:4499143*4499143452348624344Pseudomonas syringae pv. tomato str. DC3000, complete genome6e-125456BLASTN svgBLASTP svg
NC_005773:4282840*4282840431412131282Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-116428BLASTN svgBLASTP svg
NC_015733:41300004130000414900419005Pseudomonas putida S16 chromosome, complete genome5e-104387BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome4e-101377BLASTN svgBLASTP svg
NC_015733:27201832720183276059940417Pseudomonas putida S16 chromosome, complete genome4e-101377BLASTN svgBLASTP svg
NC_011901:2202690*2202690223230229613Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete3e-99371BLASTN svgBLASTP svg
NC_015740:40724154072415409719824784Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-98369BLASTN svgBLASTP svg
NC_015740:34862263486226350909922874Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-97365BLASTN svgBLASTP svg
NC_015740:36783423678342371659938258Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-95359BLASTN svgBLASTP svg
NC_015740:29985002998500301617517676Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete4e-95357BLASTN svgBLASTP svg
NC_010170:44096834409683443529725615Bordetella petrii, complete genome6e-85323BLASTN svgBLASTP svg
NC_010501:36715173671517370459933083Pseudomonas putida W619, complete genome9e-84319BLASTN svgBLASTP svg
NC_015740:14191014191016419522286Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete3e-83317BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome8e-81309BLASTN svgBLASTP svg
NC_005773:17688517688520456427680Pseudomonas syringae pv. phaseolicola 1448A, complete genome8e-81309BLASTN svgBLASTP svg
NC_005773:106000*10600015088044881Pseudomonas syringae pv. phaseolicola 1448A, complete genome8e-81309BLASTN svgBLASTP svg
NC_012560:33039613303961332159917639Azotobacter vinelandii DJ, complete genome3e-80307BLASTN svgBLASTP svg
NC_021150:33039593303959332159917641Azotobacter vinelandii CA6, complete genome3e-80307BLASTN svgBLASTP svg
NC_009649:16907169074359926693Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,1e-79305BLASTN svgBLASTP svg
NC_005773:56366065636606566314526540Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-78301BLASTN svgBLASTP svg
NC_005773:26417152641715266373322019Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-78301BLASTN svgBLASTP svg
NC_005773:38514333851433386927817846Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-73283BLASTN svgBLASTP svg
NC_005773:32535753253575328174728173Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-72281BLASTN svgBLASTP svg
NC_007005:98488*9848813693138444Pseudomonas syringae pv. syringae B728a, complete genome2e-72281BLASTN svgBLASTP svg
NC_009434:69558269558276739471813Pseudomonas stutzeri A1501, complete genome1e-64256BLASTN svgBLASTP svg
NC_021150:2451500*2451500248001928520Azotobacter vinelandii CA6, complete genome1e-45192BLASTN svgBLASTP svg
NC_012560:2451500*2451500248009928600Azotobacter vinelandii DJ, complete genome1e-45192BLASTN svgBLASTP svg
NC_009434:60876560876568209973335Pseudomonas stutzeri A1501, complete genome1e-21113BLASTN svgBLASTP svg
NC_015733:42539614253961427610922149Pseudomonas putida S16 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_015733:35958823595882362033824457Pseudomonas putida S16 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_009512:15181131518113155588037768Pseudomonas putida F1, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_020209:49437344943734497459930866Pseudomonas poae RE*1-1-14, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_012559:2752825*2752825277274819924Laribacter hongkongensis HLHK9, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012560:36986973698697372152322827Azotobacter vinelandii DJ, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_012560:5019900*5019900505162031721Azotobacter vinelandii DJ, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_012560:898416*89841692558327168Azotobacter vinelandii DJ, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_021150:36986963698696372152222827Azotobacter vinelandii CA6, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_021150:5019887*5019887505160731721Azotobacter vinelandii CA6, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_021150:898428*89842892559527168Azotobacter vinelandii CA6, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_007086:2408837*2408837243103522199Xanthomonas campestris pv. campestris str. 8004, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007086:19365051936505197809941595Xanthomonas campestris pv. campestris str. 8004, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007086:15522315522318149426272Xanthomonas campestris pv. campestris str. 8004, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007086:10321071032107105609923993Xanthomonas campestris pv. campestris str. 8004, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_003902:42520004252000427283320834Xanthomonas campestris pv. campestris str. ATCC 33913, complete9e-1073.8BLASTN svgBLASTP svg
NC_003902:39060113906011393272426714Xanthomonas campestris pv. campestris str. ATCC 33913, complete9e-1073.8BLASTN svgBLASTP svg
NC_003902:29331212933121295986926749Xanthomonas campestris pv. campestris str. ATCC 33913, complete9e-1073.8BLASTN svgBLASTP svg
NC_003902:1858349*1858349191581657468Xanthomonas campestris pv. campestris str. ATCC 33913, complete9e-1073.8BLASTN svgBLASTP svg
NC_003902:15562715562718258326957Xanthomonas campestris pv. campestris str. ATCC 33913, complete9e-1073.8BLASTN svgBLASTP svg
NC_003902:14427051442705146464821944Xanthomonas campestris pv. campestris str. ATCC 33913, complete9e-1073.8BLASTN svgBLASTP svg
NC_007086:35825003582500360369821199Xanthomonas campestris pv. campestris str. 8004, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007086:46108194610819463110920291Xanthomonas campestris pv. campestris str. 8004, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010688:673454*67345470601432561Xanthomonas campestris pv. campestris, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010688:32298203229820327221942400Xanthomonas campestris pv. campestris, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010688:30308733030873307137140499Xanthomonas campestris pv. campestris, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010688:2781624*2781624283409952476Xanthomonas campestris pv. campestris, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_010688:20526192052619207639423776Xanthomonas campestris pv. campestris, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007508:68904668904671040421359Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007508:38650003865000390220337204Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007508:14189114189117036628476Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007507:11000110003059919600Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,9e-1073.8BLASTN svgBLASTP svg
NC_015388:890008900011076621767Desulfobacca acetoxidans DSM 11109 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005773:4028500*4028500405209923600Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_011901:62571262571266531339602Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete2e-0765.9BLASTN svgBLASTP svg
NC_015222:31371673137167315861921453Nitrosomonas sp. AL212 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015222:1905194*1905194192907923886Nitrosomonas sp. AL212 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012660:1737423*1737423176616428742Pseudomonas fluorescens SBW25 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_012791:2423466*2423466246659343128Variovorax paradoxus S110 chromosome 1, complete genome3e-0661.9BLASTN svgBLASTP svg