Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:2797493 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27968162797496681hypothetical proteinBLASTP
279749328009333441hypothetical proteinBLASTP
28008812801324444hypothetical protein
28012962801763468hypothetical proteinBLASTP
280175628037982043Rhs element Vgr proteinQuickGO ontologyBLASTP
28038742804389516secreted protein HcpQuickGO ontologyBLASTP
28060112806988978ISPssy transposaseQuickGO ontologyBLASTP
28076652808165501hypothetical proteinBLASTP
280819528096701476hypothetical proteinBLASTP
28096862810093408hypothetical proteinBLASTP
281019128119781788hypothetical proteinBLASTP
281194228129491008hypothetical proteinBLASTP
281295928155622604clpB protein putativeQuickGO ontologyBLASTP
281556428170931530sigma-54 dependent transcriptional regulatorQuickGO ontologyBLASTP
28171432817283141hypothetical protein
28173372817828492hypothetical proteinBLASTP