Pre_GI: BLASTP Hits

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Query: NC_004463:1992000:2034319 Bradyrhizobium japonicum USDA 110, complete genome

Start: 2034319, End: 2035080, Length: 762

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:8221992:822574082257408226213474Bradyrhizobium japonicum USDA 6, complete genometranscriptional regulator1e-89329
NC_020453:1025891:102750510275051028296792Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-65248
NC_015675:6538500:655225765522576553003747Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator3e-31135
NC_014923:5970182:599758959975895998335747Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAutoinducer-binding domain protein3e-31135
NC_019973:5899142:592654659265465927292747Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain3e-31135
NC_015259:734795:739811739811740503693Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein2e-26119
NC_010172:5036385:503965450396545040385732Methylobacterium extorquens PA1, complete genomeAutoinducer-binding domain protein5e-26118
NC_016027:194842:203812203812204525714Gluconacetobacter xylinus NBRC 3288, complete genomeN-acylhomoserine lactone-dependent regulatory protein6e-26117
NC_010514:6000:278042780428550747Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completetranscriptional regulator, LuxR family1e-24113
NC_015637:325561:342547342547343269723Vibrio anguillarum 775 chromosome chromosome II, complete sequenceLuxR family transcriptional regulator2e-24112
NC_014817:29795:536405364054386747Asticcacaulis excentricus CB 48 chromosome 2, complete sequencetranscriptional regulator, luxr family5e-24111
NC_012988:5516872:552180955218095522306498Methylobacterium extorquens DM4, complete genomeN-acylhomoserine lactone LuxR family transcriptional regulator1e-23110
NC_010611:154307:155484155484156200717Acinetobacter baumannii ACICU, complete genomeDNA-binding HTH domain-containing protein2e-23109
NC_016603:3259432:326063032606303261346717Acinetobacter calcoaceticus PHEA-2 chromosome, complete genometranscriptional activator of quorum sensing autoinducer synthesis transcription regulator protein4e-23108
NC_007778:3784104:379951837995183800240723Rhodopseudomonas palustris HaA2, complete genometranscriptional regulator, LuxR family9e-23107
NC_010410:3777076:379324937932493793965717Acinetobacter baumannii AYE, complete genomeputative Autoinducer-binding transcriptional regulator (LuxR family)4e-22105
NC_011586:164746:165921165921166637717Acinetobacter baumannii AB0057 chromosome, complete genomeeR transcriptional regulator4e-22105
NC_011595:3607402:362357536235753624291717Acinetobacter baumannii AB307-0294, complete genometranscriptional activator protein phzR4e-22105
NC_017171:155836:157012157012157728717Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeautoinducer-binding transcriptional regulator4e-22105
NC_017387:147906:149082149082149798717Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeautoinducer-binding transcriptional regulator4e-22105
NC_014259:3984568:400097840009784001694717Acinetobacter sp. DR1 chromosome, complete genomeTranscriptional activator protein phzR6e-22104
NC_015259:485015:532878532878533531654Polymorphum gilvum SL003B-26A1 chromosome, complete genomeLuxR family transcriptional regulator7e-22104
NC_014394:1594071:159742715974271598158732Gallionella capsiferriformans ES-2 chromosome, complete genometranscriptional regulator, LuxR family1e-21103
NC_010682:460523:492274492274493035762Ralstonia pickettii 12J chromosome 1, complete sequencetranscriptional regulator, LuxR family1e-21103
NC_010681:121647:144448144448145068621Burkholderia phytofirmans PsJN chromosome 1, complete sequencetranscriptional regulator, LuxR family6e-21101
NC_015675:6423000:642840064284006429137738Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator8e-21100
NC_019973:5797000:580268958026895803426738Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain8e-21100
NC_014923:5868000:587372958737295874466738Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAutoinducer-binding domain protein8e-21100
NC_015675:6276357:630761063076106308335726Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator7e-21100
NC_019973:5650646:568189956818995682624726Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain7e-21100
NC_009254:329700:339382339382340164783Burkholderia vietnamiensis G4 chromosome 3, complete sequenceresponse regulator receiver protein2e-2099.4
NC_011004:2507566:251411225141122514834723Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, LuxR family3e-2099
NC_007958:2423335:242646424264642427186723Rhodopseudomonas palustris BisB5, complete genomeregulatory protein, LuxR3e-2099
NC_009085:131000:132302132302132898597Acinetobacter baumannii ATCC 17978, complete genomeeR transcriptional regulator8e-2097.4
NC_007511:1147696:117772911777291178448720Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LuxR family1e-1997.1
NC_010995:1417329:143831214383121439028717Cellvibrio japonicus Ueda107, complete genomeputative two-component transcriptional regulator, LuxR family2e-1996.3
NC_011001:2085986:208673720867372087456720Burkholderia cenocepacia J2315 chromosome 2, complete sequenceN-acylhomoserine lactone dependent regulatory protein CepR3e-1995.9
NC_010515:2691000:271900327190032719722720Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetranscriptional regulator, LuxR family2e-1995.9
NC_010125:2884762:293002229300222930741720Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator, luxR family2e-1995.9
NC_007802:1093785:111506011150601115791732Jannaschia sp. CCS1, complete genometranscriptional regulator, LuxR family3e-1995.5
NC_008391:2045348:205893020589302059619690Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, LuxR family4e-1995.1
NC_014834:2206119:223396822339682234687720Rhodopseudomonas palustris DX-1 chromosome, complete genomeautoinducer-binding domain-containing protein5e-1994.7
NC_010676:304405:325754325754326458705Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, LuxR family7e-1994.4
NC_020211:554736:562400562400563116717Serratia marcescens WW4, complete genometranscriptional activator protein1e-1893.6
NC_014834:614890:624618624618625346729Rhodopseudomonas palustris DX-1 chromosome, complete genomeautoinducer-binding domain-containing protein7e-1890.9
NC_014310:845527:862340862340863056717Ralstonia solanacearum PSI07 megaplasmid, complete sequenceLuxR family transcriptional regulator9e-1890.5
NC_019973:2744000:274754427475442748266723Mesorhizobium australicum WSM2073, complete genomeDNA-binding protein with HTH domain1e-1790.1
NC_015675:2839000:284249128424912843213723Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator1e-1790.1
NC_014923:2672000:267549126754912676213723Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeAutoinducer-binding domain protein1e-1790.1
NC_020453:6821500:683645968364596837193735Agromonas oligotrophica S58 DNA, complete genometranscriptional regulator, LuxR family9e-1787.4
NC_003296:941920:978998978998979744747Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSCRIPTIONAL ACTIVATOR OF QUORUM SENSING AUTOINDUCER SYNTHESIS TRANSCRIPTION REGULATOR PROTEIN2e-1686.3
NC_014618:2139639:215415321541532154866714Enterobacter cloacae SCF1 chromosome, complete genomeLuxR family transcriptional regulator4e-1685.1
NC_012880:135508:146864146864147574711Dickeya dadantii Ech703, complete genometranscriptional regulator, LuxR family8e-1684.3
NC_010159:172469:193682193682194425744Yersinia pestis Angola, complete genometranscriptional regulator, LuxR family1e-1583.6
NC_006155:3805640:383807438380743838817744Yersinia pseudotuberculosis IP 32953, complete genomeQuorum-sensing transcriptional regulator1e-1583.6
NC_003143:1059580:109199410919941092737744Yersinia pestis CO92, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_005810:3917254:392651139265113927254744Yersinia pestis biovar Microtus str. 91001, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_010465:893921:900476900476901219744Yersinia pseudotuberculosis YPIII, complete genometranscriptional regulator, LuxR family1e-1583.6
NC_008149:3556999:358796835879683588711744Yersinia pestis Nepal516, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_010634:3720214:375114637511463751889744Yersinia pseudotuberculosis PB1/+, complete genomeLuxR family transcriptional regulator1e-1583.6
NC_008150:317903:325409325409326152744Yersinia pestis Antiqua, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_004088:3689000:372009637200963720839744Yersinia pestis KIM, complete genometranscriptional activator1e-1583.6
NC_009708:874770:881339881339882082744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeLuxR family transcriptional regulator1e-1583.6
NC_014029:961522:968094968094968837744Yersinia pestis Z176003 chromosome, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_017154:902739:910246910246910989744Yersinia pestis D106004 chromosome, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_017160:905783:912355912355913098744Yersinia pestis D182038 chromosome, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_017168:3286:125371253713280744Yersinia pestis A1122 chromosome, complete genomequorum-sensing transcriptional regulator1e-1583.6
NC_017265:809943:816515816515817258744Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,quorum-sensing transcriptional regulator1e-1583.6
NC_009381:588137:594691594691595434744Yersinia pestis Pestoides F chromosome, complete genomequorum-sensing transcriptional regulator2e-1583.2
NC_017168:2999514:300692830069283007665738Yersinia pestis A1122 chromosome, complete genomequorum-sensing transcriptional activator YpeR2e-1582.8
NC_005810:2508671:252469225246922525429738Yersinia pestis biovar Microtus str. 91001, complete genomequorum-sensing transcriptional activator YpeR2e-1582.8
NC_003143:2741478:275476827547682755505738Yersinia pestis CO92, complete genomequorum-sensing transcriptional activator YpeR2e-1582.8
NC_008150:2173708:218657821865782187315738Yersinia pestis Antiqua, complete genomequorum-sensing transcriptional activator YpeR2e-1582.8
NC_004088:1909880:191632619163261917063738Yersinia pestis KIM, complete genometranscriptional activator protein2e-1582.8
NC_012779:2755338:276783827678382768557720Edwardsiella ictaluri 93-146, complete genomeAHL-dependent transcriptional regulator5e-1581.6
NC_015259:673662:679113679113679880768Polymorphum gilvum SL003B-26A1 chromosome, complete genomeTranscriptional regulator, LuxR family5e-1581.6
NC_016514:2950860:295410229541022954824723Enterobacter cloacae EcWSU1 chromosome, complete genomeregulatory protein SdiA1e-1480.1
NC_013716:3109700:312693731269373127629693Citrobacter rodentium ICC168, complete genomequorum sensing transcriptional regulator CroR2e-1479.7
NC_009436:2685910:270101327010132701735723Enterobacter sp. 638, complete genomeDNA-binding transcriptional activator SdiA4e-1478.6
NC_011894:983572:101237610123761013104729Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, LuxR family2e-1375.9
NC_005773:1851116:187462718746271875328702Pseudomonas syringae pv. phaseolicola 1448A, complete genomeautoinducer transcriptional regulator AhlR3e-1375.5
NC_011979:2641500:265821026582102658956747Geobacter sp. FRC-32, complete genometranscriptional regulator, LuxR family7e-1374.3
NC_010694:1052722:106386710638671064589723Erwinia tasmaniensis, complete genomeTranscriptional activator protein1e-1273.9
NC_014500:4691915:471160847116084712360753Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein ExpR1e-1273.9
NC_010557:207846:211136211136211855720Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, LuxR family9e-1373.9
NC_013446:2961647:296590429659042966623720Comamonas testosteroni CNB-2, complete genometranscriptional regulator, luxR family1e-1273.6
NC_014258:127500:136873136873137565693Pantoea vagans C9-1 plasmid pPag3, complete sequencetranscriptional activator protein PagR1e-1273.6
NC_015566:2125403:213303321330332133737705Serratia sp. AS12 chromosome, complete genomeregulatory protein LuxR9e-1270.9
NC_015567:2125415:213304521330452133749705Serratia sp. AS9 chromosome, complete genomeregulatory protein LuxR9e-1270.9
NC_015566:69190:867278672787458732Serratia sp. AS12 chromosome, complete genomeLuxR family transcriptional regulator2e-1169.7
NC_015567:69190:867278672787458732Serratia sp. AS9 chromosome, complete genomeLuxR family transcriptional regulator2e-1169.7
NC_011146:896000:914063914063914383321Geobacter bemidjiensis Bem, complete genome2e-1169.3
NC_016818:2836851:285495428549542855640687Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeDNA-binding protein2e-1169.3
NC_016027:2512297:252162525216252522323699Gluconacetobacter xylinus NBRC 3288, complete genomeLuxR family transcriptional regulator4e-1168.6
NC_017162:158289:158289158289158882594Acinetobacter baumannii 1656-2 chromosome, complete genomeER transcriptional regulator4e-1168.6
NC_012724:2547500:255223325522332552964732Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, LuxR family protein5e-1168.2
NC_007761:3047321:304927530492753050057783Rhizobium etli CFN 42, complete genomeautoinducer transcriptional regulator protein6e-1168.2
NC_014837:1570500:157253015725301573252723Pantoea sp. At-9b chromosome, complete genomeLuxR family transcriptional regulator9e-1167.4
NC_011982:206784:225258225258225950693Agrobacterium vitis S4 plasmid pTiS4, complete sequencetranscriptional regulator1e-1067
NC_016816:2953530:298349529834952984217723Pantoea ananatis LMG 5342, complete genometranscriptional activator protein PhzR3e-1065.9
NC_015554:4648919:465227746522774653170894Alteromonas sp. SN2 chromosome, complete genometwo-component response regulator5e-1065.1
NC_002506:822401:841276841276842037762Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completetranscriptional regulator, LuxR family5e-1065.1
NC_014837:3633378:364479836447983645586789Pantoea sp. At-9b chromosome, complete genomeLuxR family transcriptional regulator5e-1065.1
NC_009456:383819:383080383080383841762Vibrio cholerae O395 chromosome 1, complete sequenceLuxR family transcriptional regulator5e-1065.1
NC_012580:796387:815262815262816023762Vibrio cholerae M66-2 chromosome II, complete sequencetranscriptional regulator, LuxR family5e-1065.1
NC_012583:861225:880101880101880862762Vibrio cholerae O395 chromosome chromosome II, complete sequencetranscriptional regulator, LuxR family5e-1065.1
NC_012721:2406874:241317024131702413991822Burkholderia glumae BGR1 chromosome 2, complete genomeAutoinducer-binding domain protein8e-1064.3
NC_012667:504534:503795503795504547753Vibrio cholerae MJ-1236 chromosome 2, complete genometranscriptional regulator LuxR family8e-1064.3
NC_008027:2996947:301528030152803015987708Pseudomonas entomophila L48, complete genometranscriptional regulator, luxR family8e-1064.3
NC_016945:822229:841143841143841862720Vibrio cholerae IEC224 chromosome II, complete sequenceLuxR family transcriptional regulator9e-1063.9
NC_016446:522936:541850541850542569720Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completetranscriptional regulator, LuxR family9e-1063.9
NC_014838:589581:598794598794599525732Pantoea sp. At-9b plasmid pPAT9B01, complete sequencetranscriptional regulator, LuxR family2e-0963.2
NC_010943:1884695:188720418872041887908705Stenotrophomonas maltophilia K279a, complete genomeputative LuxR family transcriptional regulatory protein4e-0962
NC_010506:2441944:244888424488842449501618Shewanella woodyi ATCC 51908, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family9e-0960.8
NC_014960:1697818:172914817291481729801654Anaerolinea thermophila UNI-1, complete genomeNarL family two-component response regulator1e-0860.1
NC_015656:132633:1686491686491699141266Frankia symbiont of Datisca glomerata chromosome, complete genomeLuxR family transcriptional regulator2e-0859.3
NC_012856:2633890:265554826555482656153606Ralstonia pickettii 12D chromosome 1, complete genometwo component transcriptional regulator, LuxR family4e-0858.5
NC_010995:3745957:378226537822653782942678Cellvibrio japonicus Ueda107, complete genomeresponse regulator4e-0858.5
NC_010682:3033646:306006730600673060672606Ralstonia pickettii 12J chromosome 1, complete sequencetwo component transcriptional regulator, LuxR family4e-0858.5
NC_012997:4672147:469455346945534695464912Teredinibacter turnerae T7901, complete genomeresponse regulator receiver domain protein5e-0858.2
NC_013947:373862:382126382126382530405Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family5e-0858.2
NC_013235:1325975:132926613292661329862597Nakamurella multipartita DSM 44233, complete genometwo component transcriptional regulator, LuxR family8e-0857.8
NC_015671:2371632:2385226238522623880992874Cellvibrio gilvus ATCC 13127 chromosome, complete genomeLuxR family transcriptional regulator8e-0857.8
NC_014838:589581:599918599918600643726Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceATP-dependent transcriptional regulator, MalT-like, LuxR family7e-0857.8
NC_010995:1101614:111834711183471119285939Cellvibrio japonicus Ueda107, complete genometwo-component transcriptional regulator, LuxR family1e-0757
NC_013947:5546315:555999855599985560402405Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LuxR family2e-0756.2
NC_007435:2701242:273267027326702733380711Burkholderia pseudomallei 1710b chromosome II, complete sequencetranscriptional regulator, LuxR family2e-0756.2
NC_007951:2904644:290556829055682906209642Burkholderia xenovorans LB400 chromosome 1, complete sequenceTwo Component Transcriptional regulator, LuxR family2e-0756.2
NC_015976:2150676:215224821522482153003756Sphingobium sp. SYK-6, complete genomeLuxR family transcriptional regulator2e-0756.2
NC_016027:2580477:258117025811702581910741Gluconacetobacter xylinus NBRC 3288, complete genomeLuxR family transcriptional regulator3e-0755.8
NC_009832:110239:126205126205126522318Serratia proteamaculans 568, complete genometranscriptional regulator, LuxR family3e-0755.8
NC_006351:881655:913160913160914050891Burkholderia pseudomallei K96243 chromosome 2, complete sequenceGerR family regulatory protein3e-0755.5
NC_008148:2498000:252802925280292528718690Rubrobacter xylanophilus DSM 9941, complete genometwo component transcriptional regulator, LuxR family3e-0755.5
NC_016830:5109953:511633851163385116613276Pseudomonas fluorescens F113 chromosome, complete genomeprotein LasR4e-0755.5
NC_012914:6583000:661278966127896613517729Paenibacillus sp. JDR-2, complete genometwo component transcriptional regulator, LuxR family4e-0755.5
NC_013959:156991:163782163782164429648Sideroxydans lithotrophicus ES-1 chromosome, complete genometwo component transcriptional regulator, LuxR family6e-0754.7
NC_010617:774914:777404777404778015612Kocuria rhizophila DC2201, complete genomeNarL family two-component response regulator8e-0754.3
NC_010505:4990472:501816850181685018758591Methylobacterium radiotolerans JCM 2831, complete genometwo component transcriptional regulator, LuxR family1e-0653.9
NC_006510:2778777:2791236279123627927381503Geobacillus kaustophilus HTA426, complete genomehypothetical protein2e-0653.1
NC_016593:2851243:2863710286371028652121503Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, LuxR2e-0653.1
NC_015580:3834244:383854938385493839346798Novosphingobium sp. PP1Y, complete genomeregulatory protein LuxR2e-0653.1
NC_013947:4363250:436791043679104368308399Stackebrandtia nassauensis DSM 44728 chromosome, complete genome2e-0652.8
NC_015065:18189:387313873139354624Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetwo component transcriptional regulator, LuxR family2e-0652.8
NC_009485:1604942:163120516312051631810606Bradyrhizobium sp. BTAi1 chromosome, complete genomeLuxR transcriptional regulator3e-0652.8
NC_019757:3869047:388598738859873886706720Cylindrospermum stagnale PCC 7417, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain3e-0652.4
NC_014206:771765:7762867762867777881503Geobacillus sp. C56-T3 chromosome, complete genomeLuxR family transcriptional regulator3e-0652.4
NC_013411:735838:7403217403217418231503Geobacillus sp. Y412MC61, complete genometranscriptional regulator, LuxR family3e-0652.4
NC_014915:2847680:2860734286073428622361503Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, LuxR family3e-0652.4