Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:2904644 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
29046442905372729Integral membrane protein TerCQuickGO ontologyBLASTP
29055682906209642Two Component Transcriptional regulator LuxR familyQuickGO ontologyBLASTP
290621729075961380Periplasmic sensor signal transduction Histidine KinaseQuickGO ontologyBLASTP
29076792908506828Putative exported scaffolding proteinQuickGO ontologyBLASTP
29105082910828321hypothetical protein
291085629120101155hypothetical proteinBLASTP
29122312912818588hypothetical protein
291281529141911377hypothetical proteinBLASTP
291418429153741191Transcriptional Regulator XRE familyQuickGO ontologyBLASTP
29153792916005627hypothetical proteinBLASTP
291638529174911107Putative transposaseQuickGO ontologyBLASTP
291764829194051758hypothetical proteinBLASTP
291978629216631878hypothetical proteinBLASTP
292166029240082349Predicted ATP-dependent endonuclease OLD familyQuickGO ontologyBLASTP
29241292924464336hypothetical protein
29245572925426870hypothetical proteinBLASTP
29254452926221777hypothetical proteinBLASTP
29262052926933729hypothetical proteinBLASTP
292720729287601554Putative transposaseQuickGO ontologyBLASTP
29287762929525750Putative transposase-related ATP-binding subunitQuickGO ontologyBLASTP
292980429324522649Helicase-like proteinQuickGO ontologyBLASTP
29325702933358789Putative transposase-related ATP-binding proteinQuickGO ontologyBLASTP
293336729348901524Putative transposase catalytic subunitQuickGO ontologyBLASTP
29354472936331885hypothetical protein
293666329379371275hypothetical proteinBLASTP
29382792939040762hypothetical proteinBLASTP
29396022940444843Putative transposase-associated ATP- binding proteinQuickGO ontologyBLASTP
294044129419341494Putative transposaseQuickGO ontologyBLASTP
29427572943455699hypothetical proteinBLASTP
29443012945134834Putative F plasmid gene 32-like proteinQuickGO ontologyBLASTP