Pre_GI: BLASTP Hits

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Query: NC_008593:2457594:2496670 Clostridium novyi NT, complete genome

Start: 2496670, End: 2497359, Length: 690

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:2690448:273096427309642731656693Clostridium botulinum BKT015925 chromosome, complete genomesugar fermentation stimulation protein4e-101367
NC_003366:728859:741120741120741812693Clostridium perfringens str. 13, complete genomesugar fermentation stimulation protein8e-85313
NC_008262:654000:666620666620667312693Clostridium perfringens SM101, complete genomesugar fermentation stimulation protein1e-84312
NC_008261:676000:688429688429689121693Clostridium perfringens ATCC 13124, complete genomesugar fermentation stimulation protein5e-84310
NC_009698:38000:416514165142343693Clostridium botulinum A str. Hall chromosome, complete genomesugar fermentation stimulation protein A8e-81300
NC_009697:38000:416514165142343693Clostridium botulinum A str. ATCC 19397 chromosome, completesugar fermentation stimulation protein A8e-81300
NC_009495:38000:416364163642328693Clostridium botulinum A str. ATCC 3502 chromosome, complete genomesugar fermentation stimulation protein A8e-81300
NC_010520:35845:358453584536537693Clostridium botulinum A3 str. Loch Maree, complete genomesugar fermentation stimulation protein5e-80297
NC_012563:36000:360503605036742693Clostridium botulinum A2 str. Kyoto, complete genomesugar fermentation stimulation protein3e-80297
NC_012658:35500:356263562636318693Clostridium botulinum Ba4 str. 657 chromosome, complete genomesugar fermentation stimulation protein A3e-80297
NC_009699:33452:369933699337685693Clostridium botulinum F str. Langeland chromosome, complete genomesugar fermentation stimulation protein A3e-80297
NC_017297:33519:370613706137753693Clostridium botulinum F str. 230613 chromosome, complete genomesugar fermentation stimulation protein3e-80297
NC_021182:93000:106526106526107218693Clostridium pasteurianum BC1, complete genomesugar fermentation stimulation protein3e-74278
NC_014393:92500:104722104722105432711Clostridium cellulovorans 743B chromosome, complete genomesugar fermentation stimulation protein1e-73275
NC_007907:4859735:487454148745414875227687Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-53207
NC_009617:588897:597550597550598230681Clostridium beijerinckii NCIMB 8052 chromosome, complete genomesugar fermentation stimulation protein A2e-51201
NC_020291:5778999:579891657989165799596681Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomesugar fermentation stimulation protein SfsA1e-49196
NC_017078:179848:197331197331198005675Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1,putative sugar fermentation stimulation protein2e-48192
NC_015737:1441086:144519114451911445898708Clostridium sp. SY8519, complete genomehypothetical protein5e-41167
NC_021184:1729867:175404117540411754742702Desulfotomaculum gibsoniae DSM 7213, complete genomesugar fermentation stimulation protein2e-37155
NC_019942:112182:126358126358127128771Aciduliprofundum sp. MAR08-339, complete genomesugar fermentation stimulation protein1e-34146
NC_007644:416000:435306435306436004699Moorella thermoacetica ATCC 39073, complete genomesugar fermentation stimulation protein2e-34145
NC_013517:2437574:246154924615492462253705Sebaldella termitidis ATCC 33386, complete genomesugar fermentation stimulation protein7e-32137
NC_013926:829665:834737834737835474738Aciduliprofundum boonei T469 chromosome, complete genomesugar fermentation stimulation protein3e-31135
NC_004431:153907:171331171331172035705Escherichia coli CFT073, complete genomesugar fermentation stimulation protein1e-27123
NC_008563:149709:166804166804167508705Escherichia coli APEC O1, complete genomesugar fermentation stimulation protein1e-27123
NC_007946:149733:166828166828167532705Escherichia coli UTI89, complete genomesugar fermentation stimulation protein A1e-27123
NC_008253:149693:166231166231166935705Escherichia coli 536, complete genomesugar fermentation stimulation protein1e-27123
NC_011601:149428:166606166606167310705Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomesugar fermentation stimulation protein A1e-27123
NC_011742:149732:166827166827167531705Escherichia coli S88 chromosome, complete genomesugar fermentation stimulation protein A1e-27123
NC_011745:149594:166783166783167487705Escherichia coli ED1a chromosome, complete genomesugar fermentation stimulation protein A1e-27123
CP002516:3949061:394906139490613949765705Escherichia coli KO11, complete genomesugar fermentation stimulation protein2e-27122
CP002185:146389:162138162138162842705Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator2e-27122
AC_000091:144577:160782160782161486705Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-27122
NC_010468:3835259:383830738383073839011705Escherichia coli ATCC 8739, complete genomesugar fermentation stimulation protein2e-27122
CU928145:143755:160883160883161587705Escherichia coli 55989 chromosome, complete genomeputative regulator2e-27122
AP010958:143358:162180162180162884705Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA-binding transcriptional regulator SfsA2e-27122
NC_011748:143755:160883160883161587705Escherichia coli 55989, complete genomesugar fermentation stimulation protein A2e-27122
NC_010473:118681:134886134886135590705Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator2e-27122
NC_011750:156799:172267172267172971705Escherichia coli IAI39 chromosome, complete genomesugar fermentation stimulation protein A2e-27122
NC_002754:2326298:234311923431192343841723Sulfolobus solfataricus P2, complete genomesugar fermentation stimulation protein3e-27122
NC_000913:144577:160782160782161486705Escherichia coli K12, complete genomesugar fermentation stimulation protein A2e-27122
NC_009801:143426:162248162248162952705Escherichia coli E24377A, complete genomesugar fermentation stimulation protein2e-27122
CU928160:145276:161025161025161729705Escherichia coli IAI1 chromosome, complete genomeputative regulator2e-27122
NC_011740:165363:182768182768183472705Escherichia fergusonii ATCC 35469, complete genomeputative regulator1e-27122
NC_012967:145582:163633163633164337705Escherichia coli B str. REL606 chromosome, complete genomesugar fermentation stimulation protein A2e-27122
NC_012947:3619384:361938436193843620088705Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completesugar fermentation stimulation protein A2e-27122
NC_016902:3949061:394906139490613949765705Escherichia coli KO11FL chromosome, complete genomesugar fermentation stimulation protein2e-27122
NC_013364:143492:162314162314163018705Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding transcriptional regulator SfsA2e-27122
NC_013361:145461:163512163512164216705Escherichia coli O26:H11 str. 11368 chromosome, complete genomesugar fermentation stimulation protein A2e-27122
NC_013353:143358:162180162180162884705Escherichia coli O103:H2 str. 12009, complete genomeDNA-binding transcriptional regulator SfsA2e-27122
NC_012759:144576:160781160781161485705Escherichia coli BW2952 chromosome, complete genomesugar fermentation stimulation protein A2e-27122
NC_011741:145276:161025161025161729705Escherichia coli IAI1 chromosome, complete genomesugar fermentation stimulation protein A2e-27122
NC_011415:146397:162146162146162850705Escherichia coli SE11 chromosome, complete genomesugar fermentation stimulation protein A2e-27122
NC_010498:153755:171187171187171891705Escherichia coli SMS-3-5, complete genomesugar fermentation stimulation protein3e-27121
NC_006177:1060428:106489110648911065646756Symbiobacterium thermophilum IAM 14863, complete genomesugar fermentation stimulation protein9e-27120
NC_010278:1918000:193449719344971935210714Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,sugar fermentation stimulation protein A1e-26119
NC_014935:1047411:105070510507051051412708Nitratifractor saLSUginis DSM 16511 chromosome, complete genomesugar fermentation stimulation protein1e-26119
NC_000918:35564:367823678237426645Aquifex aeolicus VF5, complete genomesugar fermentation stimulation protein4e-26118
NC_013961:2861949:287852128785212879225705Erwinia amylovora, complete genomeSugar fermentation stimulation protein A8e-26117
NC_009053:1942973:197296119729611973674714Actinobacillus pleuropneumoniae L20, complete genomesugar fermentation stimulation-like protein6e-26117
NC_010939:1986263:199784419978441998557714Actinobacillus pleuropneumoniae serovar 7 str. AP76, completesugar fermentation stimulation-like protein6e-26117
NC_010337:2950500:2971779297177929729481170Heliobacterium modesticaldum Ice1, complete genomesugar fermentation stimulation protein7e-25114
NC_014972:3604534:362741736274173628160744Desulfobulbus propionicus DSM 2032 chromosome, complete genomesugar fermentation stimulation protein8e-25114
NC_015942:1824847:182484718248471825545699Acidithiobacillus ferrivorans SS3 chromosome, complete genomeSugar fermentation stimulation protein A9e-25113
NC_010730:180000:184407184407185126720Sulfurihydrogenibium sp. YO3AOP1, complete genomesugar fermentation stimulation protein2e-24112
NC_011184:2421687:244456524445652445272708Vibrio fischeri MJ11 chromosome I, complete sequencesugar fermentation stimulation protein2e-23109
NC_021184:3497000:349703634970363497620585Desulfotomaculum gibsoniae DSM 7213, complete genomesugar fermentation stimulation protein3e-23108
NC_002689:696500:708898708898709548651Thermoplasma volcanium GSS1, complete genomesugar fermentation stimulation protein3e-21101
NC_009655:1083639:110143911014391102155717Actinobacillus succinogenes 130Z chromosome, complete genomesugar fermentation stimulation protein A5e-21101
NC_003106:1027176:103975810397581040435678Sulfolobus tokodaii str. 7, complete genomesugar fermentation stimulation protein2e-2099.4
NC_014731:296000:322053322053322784732Halogeometricum borinquense DSM 11551 plasmid pHBOR02, completesugar fermentation stimulation protein6e-2097.4
NC_011883:2680380:270625327062532707059807Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,sugar fermentation stimulation protein6e-1994.4
NC_013939:1625491:162919216291921629869678Deferribacter desulfuricans SSM1, complete genomesugar fermentation stimulation protein A7e-1890.5
NC_010338:4108280:410909641090964109809714Caulobacter sp. K31, complete genomesugar fermentation stimulation protein8e-1890.5
NC_002578:828000:850102850102850737636Thermoplasma acidophilum DSM 1728, complete genomesugar fermentation stimulation protein2e-1685.9
NC_014160:869873:870228870228870932705Thermosphaera aggregans DSM 11486 chromosome, complete genomesugar fermentation stimulation protein2e-1479.3
NC_014205:1331594:135342113534211354125705Staphylothermus hellenicus DSM 12710 chromosome, complete genomesugar fermentation stimulation protein1e-1273.2
NC_013790:756000:769991769991770740750Methanobrevibacter ruminantium M1 chromosome, complete genomesugar fermentation stimulation protein SfsA13e-1272
NC_002936:1004570:102212110221211022840720Dehalococcoides ethenogenes 195, complete genomesugar fermentation stimulation protein, putative5e-1064.7