Pre_GI: BLASTP Hits

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Query: NC_007606:2353098:2361959 Shigella dysenteriae Sd197, complete genome

Start: 2361959, End: 2364354, Length: 2396

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:2928000:2953577295357729571703594Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0842
NC_013008:3231414:3271498327149832750913594Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0842
NC_002695:3189425:3212511321251132161043594Escherichia coli O157:H7 str. Sakai, complete genomeputative sensor for regulator EvgA0842
NC_011751:2768864:2776961277696127805543594Escherichia coli UMN026 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0842
NC_007384:2587876:2597542259754226011353594Shigella sonnei Ss046, complete genomeputative sensor for regulator EvgA0838
NC_016822:2678691:2688357268835726919503594Shigella sonnei 53G, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0837
NC_010658:2529033:2539071253907125426643594Shigella boydii CDC 3083-94, complete genomesensor histidine kinase/response regulator EvgS0836
NC_007613:2376974:2386306238630623898993594Shigella boydii Sb227, complete genomeputative sensor for regulator EvgA0836
NC_009800:2505872:2515779251577925193723594Escherichia coli HS, complete genomesensor histidine kinase/response regulator EvgS0827
NC_012967:2409500:2418601241860124221943594Escherichia coli B str. REL606 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0827
NC_012947:1363724:1374049137404913776423594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehybrid sensory histidine kinase in two-component regulatory system with EvgA0827
NC_010468:1412791:1423116142311614267093594Escherichia coli ATCC 8739, complete genomeHpt sensor hybrid histidine kinase0827
AP010958:2911741:2935371293537129389643594Escherichia coli O103:H2 str. 12009 DNA, complete genomehybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA0825
NC_013353:2911741:2935371293537129389643594Escherichia coli O103:H2 str. 12009, complete genomehybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA0825
NC_011745:2751437:2759117275911727627103594Escherichia coli ED1a chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0825
CU928145:2708500:2716755271675527203483594Escherichia coli 55989 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0825
NC_011748:2708500:2716755271675527203483594Escherichia coli 55989, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0825
NC_011415:2732000:2752482275248227560753594Escherichia coli SE11 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0824
NC_011750:2585015:2606176260617626097693594Escherichia coli IAI39 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0824
NC_008563:2610499:2618179261817926217723594Escherichia coli APEC O1, complete genomesensor protein EvgS precursor0823
NC_007946:2625461:2645642264564226492353594Escherichia coli UTI89, complete genomesensor protein EvgS precursor0823
NC_011742:2533500:2541274254127425448673594Escherichia coli S88 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0823
NC_008253:2499735:2507809250780925114023594Escherichia coli 536, complete genomesensor protein EvgS precursor0823
NC_008258:2473000:2481177248117724847703594Shigella flexneri 5 str. 8401, complete genomeputative sensor for regulator EvgA0822
NC_004337:2478461:2487437248743724910303594Shigella flexneri 2a str. 301, complete genomeputative sensor for regulator EvgA0822
NC_011601:2614691:2640787264078726443803594Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0822
NC_009801:2639787:2647883264788326514763594Escherichia coli E24377A, complete genomesensor histidine kinase/response regulator EvgS0822
CU928160:2513000:2521244252124425248373594Escherichia coli IAI1 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0822
NC_011741:2513000:2521244252124425248373594Escherichia coli IAI1 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0822
NC_007606:4182188:4192185419218541957783594Shigella dysenteriae Sd197, complete genomeputative sensor for regulator EvgA0822
CP002185:2659628:2668833266883326724263594Escherichia coli W, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0821
CP002516:1419413:1433431143343114370243594Escherichia coli KO11, complete genomeHpt sensor hybrid histidine kinase0821
NC_016902:1419413:1433431143343114370243594Escherichia coli KO11FL chromosome, complete genomeHpt sensor hybrid histidine kinase0821
NC_004741:2456297:2465576246557624691693594Shigella flexneri 2a str. 2457T, complete genomeputative sensor for regulator EvgA0819
NC_004431:2747237:2766762276676227703553594Escherichia coli CFT073, complete genomeSensor protein evgS precursor0816
NC_011353:3276734:3316837331683733202203384Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA0697
NC_010498:2555706:2575404257540425787873384Escherichia coli SMS-3-5, complete genomesensor histidine kinase/response regulator EvgS0682
CP002797:2472908:2486251248625124895713321Escherichia coli NA114, complete genomesensory histidine kinase0680
NC_017328:2516000:2525406252540625286723267Shigella flexneri 2002017 chromosome, complete genomeputative Sensor protein1e-171603
NC_014618:1103239:1108693110869311118783186Enterobacter cloacae SCF1 chromosome, complete genomeHpt sensor hybrid histidine kinase6e-77289
NC_009792:4017510:4039164403916440423463183Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-76286
NC_009648:3803622:3838120383812038413623243Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative sensor protein EvgS19e-68258
NC_010322:1817598:1859258185925818616482391Pseudomonas putida GB-1 chromosome, complete genomeputative PAS/PAC sensor protein3e-35150
NC_004578:2560473:2581120258112025833752256Pseudomonas syringae pv. tomato str. DC3000, complete genomeextracellular solute-binding protein/sensory box protein3e-34147
NC_020829:3050817:3059988305998830636233636Pseudomonas denitrificans ATCC 13867, complete genomeputative two-component system sensor kinase3e-31137
NC_016830:2168523:2188378218837821915783201Pseudomonas fluorescens F113 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-30135
NC_011663:180889:1964801964802000553576Shewanella baltica OS223 chromosome, complete genomemulti-sensor hybrid histidine kinase4e-1997.4
NC_015224:1914833:1936266193626619399853720Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative virulence sensor protein1e-1895.5
NC_008463:2654014:2661144266114426641222979Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative sensor/response regulator hybrid7e-1789.7
NC_007946:289425:312482312482312757276Escherichia coli UTI89, complete genomehypothetical protein1e-1482.8
NC_009656:4527457:4540545454054545433912847Pseudomonas aeruginosa PA7 chromosome, complete genomevirulence sensor protein BvgS1e-1482.8
NC_007520:2391675:2400483240048324047154233Thiomicrospira crunogena XCL-2, complete genomePAS/PAC sensor hybrid histidine kinase5e-1480.5
NC_009439:4404942:4406940440694044106743735Pseudomonas mendocina ymp, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)2e-1378.6
NC_015379:6226661:6228660622866062323793720Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative diguanylate cyclase/phosphodiesterase1e-1275.9
NC_008570:1094442:1104414110441411078423429Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeresponse regulator/sensor histidine kinase2e-1275.1
NC_008258:4345400:4350843435084343522581416Shigella flexneri 5 str. 8401, complete genome5e-1273.9
NC_010515:1678487:1707597170759717113103714Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencemulti-sensor hybrid histidine kinase4e-1067.4
NC_008463:632869:6433476433476470843738Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein2e-0862
NC_009512:469000:4821324821324858753744Pseudomonas putida F1, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)3e-0861.2
NC_017192:2153461:2174987217498721781573171Arcobacter sp. L, complete genometwo-component sensor kinase3e-0861.2
NC_010515:1618093:1645024164502416486083585Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencePAS/PAC sensor hybrid histidine kinase5e-0860.5
NC_015733:443122:4535964535964573393744Pseudomonas putida S16 chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase7e-0860.1
NC_007492:1193626:1193626119362611950141389Pseudomonas fluorescens PfO-1, complete genomePossible Sensor with PAS/PAC domain9e-0859.7
NC_007606:3842708:3842708384270838457133006Shigella dysenteriae Sd197, complete genome3e-0758.2
NC_017192:1799000:1813625181362518168313207Arcobacter sp. L, complete genometwo-component sensor kinase7e-0653.1