Pre_GI Gene

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Host: NC_015379 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015379:6226661 Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,

Host Lineage: Pseudomonas brassicacearum; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas brassicacearum is a Gram-negative soil bacterium that infects the roots of Brassica napus, from which it derives its name. Based on 16S rRNA analysis, P. brassicacearum falls within the P. fluorescens group. It has also been shown to have both pathogenic and plant growth-promoting effects on tomato plants.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
622666162285081848RNA polymerase sigma factor sigma-70QuickGO ontologyBLASTP
622866062323793720putative diguanylate cyclasephosphodiesteraseQuickGO ontologyBLASTP
623253562336681134putative phage integraseQuickGO ontologyBLASTP
62339086234138231Hypothetical proteinQuickGO ontologyBLASTP
62341416234968828putative transcriptional regulator Rrf2 familyQuickGO ontologyBLASTP
62349656235696732putative type IV secretion system protein virB5QuickGO ontologyBLASTP
62357076236141435Hypothetical protein putative membrane proteinQuickGO ontologyBLASTP
62361386236398261Hypothetical proteinQuickGO ontologyBLASTP
623640062374521053putative type IV secretion system protein virB6QuickGO ontologyBLASTP
62375346237791258Hypothetical proteinQuickGO ontology
62377366237930195Hypothetical proteinQuickGO ontologyBLASTP
62379616238254294Hypothetical proteinQuickGO ontology
62385086238804297Hypothetical proteinQuickGO ontology
62392846239502219hypothetical protein
62395356239747213Hypothetical proteinQuickGO ontology
623974062427092970putative type III restriction enzyme res subunitQuickGO ontologyBLASTP
624308862441851098Hypothetical proteinQuickGO ontology
62443356244517183Hypothetical proteinQuickGO ontology
62444956244656162Hypothetical proteinQuickGO ontology
624467762459571281putative methylaseQuickGO ontologyBLASTP
624595962470891131Hypothetical proteinQuickGO ontologyBLASTP
62470936247863771Hypothetical proteinQuickGO ontology
62479216248694774Hypothetical proteinQuickGO ontology
62488986249206309Hypothetical proteinQuickGO ontology
62491916250120930putative transcriptional regulator LysR familyQuickGO ontologyBLASTP
62502486250967720putative protocatechuate 34-dioxygenase beta-chainQuickGO ontologyBLASTP
62509806251582603putative protocatechuate 34-dioxygenase alpha-chainQuickGO ontologyBLASTP
625193462542522319hypothetical proteinBLASTP
62542896254750462putative transcriptional regulator Fis familyQuickGO ontologyBLASTP
625494062566221683putative oxidoreductaseQuickGO ontologyBLASTP
62566356257429795putative hydrolaseQuickGO ontologyBLASTP
625749262599332442putative coenzyme PQQ biosynthesis-related proteinQuickGO ontologyBLASTP
62602596261170912coenzyme PQQ synthesis protein BQuickGO ontologyBLASTP
62612756262027753pyrroloquinoline-quinone synthaseQuickGO ontologyBLASTP
62620246262299276coenzyme PQQ synthesis protein DQuickGO ontologyBLASTP
626227162634401170coenzyme PQQ synthesis protein EQuickGO ontologyBLASTP
626340662652351830putative peptidaseQuickGO ontologyBLASTP