Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015379: Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,

NCBI: NC_015379

Host Lineage: Pseudomonas brassicacearum; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas brassicacearum is a Gram-negative soil bacterium that infects the roots of Brassica napus, from which it derives its name. Based on 16S rRNA analysis, P. brassicacearum falls within the P. fluorescens group. It has also been shown to have both pathogenic and plant growth-promoting effects on tomato plants.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
189441*11781628376Island text1.8169928.637424.6466Neighbours11BLASTNIslandViewer 89441.gbk
290890497110662203Island text2.1933731.536132.1086Neighbours11BLASTN+IslandViewer 908904.gbk
31151143*118279531653Island text3.6950139.36637.5088Neighbours11BLASTNIslandViewer 1151143.gbk
41600715*162682426110Island text2.3070530.642424.1933Neighbours11BLASTN+IslandViewer 1600715.gbk
51887275*191854531271Island text2.3511831.084838.5695Neighbours11BLASTNIslandViewer 1887275.gbk
62417312*246459947288Island text1.8573425.709123.8117Neighbours11BLASTNIslandViewer 2417312.gbk
72482901250376220862Island text1.6812323.165926.5404Neighbours11BLASTN+IslandViewer 2482901.gbk
82505233254669441462Island text1.5864223.301332.3418Neighbours11BLASTN+IslandViewer 2505233.gbk
92575000259943424435Island text1.9307326.407830.8632Neighbours11BLASTN+IslandViewer 2575000.gbk
102751342277455823217Island text1.6142422.416127.7318Neighbours11BLASTN+2751342.gbk
112999965302200322039Island text1.5900323.525727.7054Neighbours11BLASTNIslandViewer 2999965.gbk
123175500319347517976Island text1.4570224.015122.2682Neighbours11BLASTN+3175500.gbk
133570658359449623839Island text1.4834522.926820.7699Neighbours11BLASTN+3570658.gbk
143736500*376722330724Island text1.8193226.575227.1846Neighbours11BLASTN+IslandViewer 3736500.gbk
154249238427562626389Island text2.5720136.671433.0211Neighbours11BLASTN+IslandViewer 4249238.gbk
164282815*430375120937Island text1.7567624.106335.0997Neighbours11BLASTN+4282815.gbk
174426827444459917773Island text1.5321223.185231.2036Neighbours11BLASTN+4426827.gbk
184630367466559935233Island text1.7066427.162523.6866Neighbours11BLASTN+IslandViewer 4630367.gbk
194691868*471845126584Island text1.8233228.263839.9203Neighbours11BLASTN+IslandViewer 4691868.gbk
205002595*502209219498Island text1.6606422.035128.2282Neighbours11BLASTN5002595.gbk
216023926604728023355Island text1.7727323.946444.6793Neighbours11BLASTN+IslandViewer 6023926.gbk
226226661*626523538575Island text2.739633.753335.3222Neighbours11BLASTN+IslandViewer 6226661.gbk
236714545674216027616Island text2.2180932.742446.3836Neighbours11BLASTN+IslandViewer 6714545.gbk