Pre_GI: BLASTN Hits

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Query: NC_015379:3570658 Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,

Start: 3570658, End: 3594496, Length: 23839

Host Lineage: Pseudomonas brassicacearum; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas brassicacearum is a Gram-negative soil bacterium that infects the roots of Brassica napus, from which it derives its name. Based on 16S rRNA analysis, P. brassicacearum falls within the P. fluorescens group. It has also been shown to have both pathogenic and plant growth-promoting effects on tomato plants.




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Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004129:34528853452885349484041956Pseudomonas fluorescens Pf-5, complete genome01965BLASTN svgBLASTP svg
NC_020209:39737639737645309955724Pseudomonas poae RE*1-1-14, complete genome5e-94353BLASTN svgBLASTP svg
NC_007492:31804803180480323474054261Pseudomonas fluorescens PfO-1, complete genome1e-36163BLASTN svgBLASTP svg
NC_021066:1712905*1712905175859645692Raoultella ornithinolytica B6, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014840:76232762329583419603Pantoea sp. At-9b plasmid pPAT9B03, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_008390:1293823*1293823131887025048Burkholderia cepacia AMMD chromosome 1, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_014355:18650031865003194366878666Candidatus Nitrospira defluvii, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010501:5735656*5735656577333937684Pseudomonas putida W619, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015733:5955467*5955467598799932533Pseudomonas putida S16 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015733:27201832720183276059940417Pseudomonas putida S16 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007643:2722265*2722265275282330559Rhodospirillum rubrum ATCC 11170, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013169:12900001290000131283622837Kytococcus sedentarius DSM 20547, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003143:22586362258636227843519800Yersinia pestis CO92, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_004088:25410332541033256388322851Yersinia pestis KIM, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_005810:20437302043730206409920370Yersinia pestis biovar Microtus str. 91001, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_006155:23341222334122235510620985Yersinia pseudotuberculosis IP 32953, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008027:38443553844355388629641942Pseudomonas entomophila L48, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008149:16699211669921169183421914Yersinia pestis Nepal516, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008150:15436351543635156595322319Yersinia pestis Antiqua, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010465:24286202428620244757218953Yersinia pseudotuberculosis YPIII, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010634:2252329*2252329227409821770Yersinia pseudotuberculosis PB1/+, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010998:11105211105213523024179Rhizobium etli CIAT 652 plasmid pA, complete sequence7e-1073.8BLASTN svgBLASTP svg
NC_012792:38567038567040991424245Variovorax paradoxus S110 chromosome 2, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_020211:1655826*1655826167870522880Serratia marcescens WW4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013172:95377295377297644022669Brachybacterium faecium DSM 4810, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013592:2968500*2968500300769039191Dickeya dadantii Ech586, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010170:1661915*1661915168523723323Bordetella petrii, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008752:2334511*2334511236012625616Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007511:17805001780500180270922210Burkholderia sp. 383 chromosome 2, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_002488:16389461638946170065561710Xylella fastidiosa 9a5c, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004129:10149861014986103609921114Pseudomonas fluorescens Pf-5, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006351:27597082759708280620746500Burkholderia pseudomallei K96243 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_007435:14469161446916149170044785Burkholderia pseudomallei 1710b chromosome II, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_009078:27187412718741276343044690Burkholderia pseudomallei 1106a chromosome II, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_009512:10253651025365104401118647Pseudomonas putida F1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010002:42566514256651428631629666Delftia acidovorans SPH-1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013093:73773773773776222824492Actinosynnema mirum DSM 43827, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015563:33090973309097334276333667Delftia sp. Cs1-4 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007908:10101621010162103411423953Rhodoferax ferrireducens T118, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008835:18279051827905185016122257Burkholderia mallei NCTC 10229 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_009079:40289140289142220419314Burkholderia mallei NCTC 10247 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg
NC_014217:80040680040682559925194Starkeya novella DSM 506 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014837:2709813*2709813273364723835Pantoea sp. At-9b chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020064:3825916*3825916385292327008Serratia marcescens FGI94, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006349:40080740080742001219206Burkholderia mallei ATCC 23344 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg