Pre_GI Gene

Some Help

Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:4404942 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
440494244067891848RNA polymerase sigma factor RpoDQuickGO ontologyBLASTP
440694044106743735diguanylate cyclasephosphodiesterase with PASPAC and GAF sensorsQuickGO ontologyBLASTP
44109994411331333hypothetical protein
44115334411799267XRE family transcriptional regulatorQuickGO ontologyBLASTP
441179644131301335HipA domain-containing proteinQuickGO ontologyBLASTP
44134294414199771NERD domain-containing proteinQuickGO ontologyBLASTP
441435244157521401hypothetical proteinBLASTP
44157494416729981hypothetical proteinBLASTP
441685244179491098DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
441831644195991284hypothetical proteinBLASTP
44196024420564963methyltransferase type 12QuickGO ontologyBLASTP
44208044421028225hypothetical proteinBLASTP
44211454421795651two component LuxR family transcriptional regulatorQuickGO ontologyBLASTP
442179744234281632integral membrane sensor hybrid histidine kinaseQuickGO ontologyBLASTP
44236114423982372hypothetical proteinBLASTP
442401744251171101diguanylate cyclaseQuickGO ontologyBLASTP
442520544265001296TRAP dicarboxylate transporter DctM subunitQuickGO ontologyBLASTP
44264904426966477tripartite ATP-independent periplasmic transporter DctQQuickGO ontology
442712444281251002TRAP dicarboxylate transporter DctP subunitQuickGO ontologyBLASTP
442842344298831461sigma-54 dependent trancsriptional regulatorQuickGO ontologyBLASTP