Pre_GI Gene

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Host: NC_009512 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:469000 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
4691204715492430coenzyme PQQ biosynthesis protein PqqFQuickGO ontologyBLASTP
471561472355795Nitrilasecyanide hydratase and apolipoprotein N-acyltransferaseQuickGO ontologyBLASTP
4723704740521683amine oxidaseQuickGO ontologyBLASTP
474365474826462putative transcriptional regulator AsnC familyQuickGO ontologyBLASTP
475014475568555Serine acetyltransferase-like proteinQuickGO ontologyBLASTP
475912476193282hypothetical proteinBLASTP
476510477103594hypothetical proteinBLASTP
477112477678567protein of unknown function DUF955QuickGO ontologyBLASTP
4776654787321068hypothetical proteinBLASTP
478721479329609hypothetical proteinBLASTP
479578480273696Integrase catalytic regionQuickGO ontologyBLASTP
481598481834237transposase IS3IS911 family proteinQuickGO ontologyBLASTP
4821324858753744diguanylate cyclasephosphodiesterase with PASPAC and GAF sensorsQuickGO ontologyBLASTP
4860034878531851RNA polymerase sigma 70 subunit RpoDQuickGO ontologyBLASTP
4879214899031983DNA primaseQuickGO ontologyBLASTP
490208490423216ribosomal protein S21QuickGO ontologyBLASTP
4906284916531026putative metalloendopeptidase glycoprotease familyQuickGO ontologyBLASTP
491671492240570protein of unknown function DUF205QuickGO ontologyBLASTP
492315492671357dihydroneopterin aldolaseQuickGO ontologyBLASTP
4926624931715102-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinaseQuickGO ontologyBLASTP