Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2505872 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
25058722506627756lipoprotein VacJ familyQuickGO ontologyBLASTP
25066532506823171hypothetical proteinBLASTP
25069212507853933hypothetical proteinBLASTP
2507928250800477tRNA-ArgQuickGO ontology
25080992509034936D-serine deaminase transcriptional activatorQuickGO ontologyBLASTP
250925225105891338transporter gluconateH symporter GntP familyQuickGO ontologyBLASTP
251060725119351329D-serine ammonia-lyaseQuickGO ontologyBLASTP
251204325135811539multidrug resistance protein YQuickGO ontologyBLASTP
251358125147441164drug resistance MFS transporter membrane fusion protein MFP subunit EmrKQuickGO ontologyBLASTP
25151602515774615positive transcription regulator EvgSQuickGO ontologyBLASTP
251577925193723594sensor histidine kinaseresponse regulator EvgSQuickGO ontologyBLASTP
251942825205731146CAIBBAIF familyQuickGO ontologyBLASTP
25206472521591945transporter auxin efflux carrier familyQuickGO ontologyBLASTP
252166125233551695thiamine pyrophosphate-dependent enzymeQuickGO ontologyBLASTP
252340925246591251formyl-coenzyme A transferaseQuickGO ontologyBLASTP
25251722525804633hypothetical proteinBLASTP
25264522526694243hypothetical proteinBLASTP
25270472527967921lipid A biosynthesis lauroyl acyltransferase family proteinQuickGO ontologyBLASTP