Pre_GI: BLASTP Hits

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Query: NC_010741:12542:21555 Treponema pallidum subsp. pallidum SS14, complete genome

Start: 21555, End: 22043, Length: 489

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema pallidum subsp. pallidum SS14 was isolated in 1977 from a patient with secondary syphilis. This strain is less susceptible than the Nichols strain for a number of antibiotics. This organisms is divided into subspecies each of which causes a specific disease. This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021508:12543:1936819368220492682Treponema pallidum subsp. pallidum SS14, complete genometranscription elongation factor GreA1e-90331
NC_017268:1:1937119371220522682Treponema pallidum subsp. pallidum str. Chicago chromosome,1e-90331
NC_016844:12545:1937019370220512682Treponema pallidum subsp. pallidum DAL-1 chromosome, completetranscription elongation factor GreA1e-90331
NC_016848:12548:1937319373220542682Treponema pallidum subsp. pertenue str. CDC2 chromosome, completetranscription elongation factor GreA1e-90331
NC_016843:1:1937319373220542682Treponema pallidum subsp. pertenue str. Gauthier chromosome,transcription elongation factor GreA1e-90331
NC_016842:1:1937319373220542682Treponema pallidum subsp. pertenue str. SamoaD chromosome, completetranscription elongation factor GreA1e-90331
NC_000919:12545:215582155822046489Treponema pallidum subsp. pallidum str. Nichols, complete genometranscription elongation factor (greA)1e-89328
NC_014484:1163576:1198728119872812014242697Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein8e-42169
NC_008710:108057:1278651278651305672703Borrelia turicatae 91E135, complete genometranscription elongation factor GreA1e-33142
NC_010673:113133:1281021281021308072706Borrelia hermsii DAH, complete genometranscription elongation factor GreA1e-33141
NC_016894:1092005:109614710961471096629483Acetobacterium woodii DSM 1030 chromosome, complete genometranscription elongation factor GreA7e-1992.8
NC_015318:1151422:117480011748001175270471Hippea maritima DSM 10411 chromosome, complete genometranscription elongation factor GreA1e-1789
NC_012880:3915500:392881439288143929290477Dickeya dadantii Ech703, complete genometranscription elongation factor GreA7e-1786.3
NC_015977:3324000:334119633411963341681486Roseburia hominis A2-183 chromosome, complete genometranscription elongation factor GreA7e-1683.2
NC_009465:813816:831932831932832411480Candidatus Vesicomyosocius okutanii HA, complete genometranscription elongation factor GreA6e-1683.2
NC_014831:149626:155894155894156373480Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscription elongation factor GreA8e-1682.8
NC_019814:320260:332304332304332780477Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonastranscription elongation factor GreA2e-1582
NC_017243:2190000:220210222021022202566465Brachyspira intermedia PWS/A chromosome, complete genometranscription elongation factor GreA2e-1581.6
NC_007759:623116:635172635172635657486Syntrophus aciditrophicus SB, complete genometranscription elongation factor2e-1581.3
NC_018664:2459994:247645724764572476933477Clostridium acidurici 9a chromosome, complete genometranscription elongation factor GreA4e-1580.5
NC_010516:3807780:383327238332723833754483Clostridium botulinum B1 str. Okra, complete genometranscription elongation factor GreA4e-1580.5
NC_012563:4004709:403019040301904030672483Clostridium botulinum A2 str. Kyoto, complete genometranscription elongation factor GreA4e-1580.5
NC_009699:3839575:386505338650533865535483Clostridium botulinum F str. Langeland chromosome, complete genometranscription elongation factor GreA4e-1580.5
NC_017297:3838189:386367538636753864157483Clostridium botulinum F str. 230613 chromosome, complete genometranscription elongation factor GreA4e-1580.5
NC_015555:277364:293664293664294137474Thermoanaerobacterium xylanolyticum LX-11 chromosome, completetranscription elongation factor GreA5e-1580.1
NC_014393:4541000:455994645599464560422477Clostridium cellulovorans 743B chromosome, complete genometranscription elongation factor GreA7e-1579.7
NC_011658:4171237:417659341765934177069477Bacillus cereus AH187 chromosome, complete genometranscription elongation factor GreA1e-1479.3
NC_011969:4065460:407195340719534072429477Bacillus cereus Q1 chromosome, complete genometranscription elongation factor grea1e-1479.3
NC_007530:4176462:418581541858154186291477Bacillus anthracis str. 'Ames Ancestor', complete genometranscription elongation factor GreA1e-1479.3
NC_005957:4169610:417497241749724175448477Bacillus thuringiensis serovar konkukian str. 97-27, completetranscription elongation factor GreA1e-1479.3
NC_020299:149118:161146161146161622477Candidatus Kinetoplastibacterium oncopeltii TCC290E, completetranscription elongation factor GreA9e-1579.3
NC_017200:4191963:419713941971394197666528Bacillus thuringiensis serovar finitimus YBT-020 chromosome,transcription elongation factor GreA1e-1479
NC_004129:957890:963439963439963915477Pseudomonas fluorescens Pf-5, complete genometranscription elongation factor GreA1e-1479
NC_021182:4602683:462331946233194623801483Clostridium pasteurianum BC1, complete genometranscription elongation factor GreA1e-1479
NC_016893:563890:568045568045568521477Wigglesworthia glossinidia endosymbiont of Glossina morsitanstranscription elongation factor1e-1479
NC_014335:4113154:411750441175044118031528Bacillus cereus biovar anthracis str. CI chromosome, completetranscription elongation factor1e-1479
NC_020063:528296:528296528296528772477Enterobacteriaceae bacterium strain FGI 57, complete genometranscription elongation factor GreA2e-1478.6
NC_004557:162670:169858169858170418561Clostridium tetani E88, complete genometranscription elongation factor GreA2e-1478.6
NC_014378:131810:133032133032133505474Acetohalobium arabaticum DSM 5501 chromosome, complete genometranscription elongation factor GreA2e-1478.6
NC_009495:3735703:376226637622663762748483Clostridium botulinum A str. ATCC 3502 chromosome, complete genometranscription elongation factor GreA1e-1478.6
NC_009697:3711692:373825537382553738737483Clostridium botulinum A str. ATCC 19397 chromosome, completetranscription elongation factor GreA1e-1478.6
NC_009698:3609881:363536536353653635847483Clostridium botulinum A str. Hall chromosome, complete genometranscription elongation factor GreA1e-1478.6
NC_009922:490500:505333505333505812480Alkaliphilus oremlandii OhILAs, complete genometranscription elongation factor GreA1e-1478.6
NC_011772:4321117:432379843237984324325528Bacillus cereus G9842, complete genometranscription elongation factor GreA2e-1478.6
NC_015422:2806832:280798628079862808462477Alicycliphilus denitrificans K601 chromosome, complete genometranscription elongation factor GreA2e-1478.2
NC_009089:4140764:415423441542344154713480Clostridium difficile 630, complete genometranscription elongation factor2e-1477.8
NC_013316:4018451:403255640325564033035480Clostridium difficile R20291, complete genometranscription elongation factor grea2e-1477.8
NC_010524:3094303:310650431065043106980477Leptothrix cholodnii SP-6, complete genometranscription elongation factor GreA3e-1477.8
NC_002528:404545:424946424946425425480Buchnera aphidicola str. APS (Acyrthosiphon pisum), completetranscription elongation factor GreA4e-1477
NC_010519:1684901:168490116849011685377477Haemophilus somnus 2336 chromosome, complete genometranscription elongation factor GreA5e-1477
NC_013716:4885776:489403748940374894513477Citrobacter rodentium ICC168, complete genometranscription elongation factor5e-1477
NC_015968:4117835:416070141607014161177477Enterobacter asburiae LF7a chromosome, complete genometranscription elongation factor GreA7e-1476.6
NC_004545:392685:406178406178406657480Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genometranscription elongation factor GreA6e-1476.6
NC_019815:782987:791359791359791835477Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneitranscription elongation factor GreA6e-1476.6
NC_005296:4574213:461225246122524612728477Rhodopseudomonas palustris CGA009, complete genometranscription elongation factor GreA8e-1476.3
NC_011004:4947980:496777749677774968253477Rhodopseudomonas palustris TIE-1, complete genometranscription elongation factor GreA8e-1476.3
NC_009454:259022:262834262834263310477Pelotomaculum thermopropionicum SI, complete genometranscription elongation factor1e-1375.5
NC_009053:1081651:108525610852561085732477Actinobacillus pleuropneumoniae L20, complete genometranscription elongation factor GreA2e-1375.1
NC_010278:1045884:104948910494891049965477Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,transcription elongation factor GreA2e-1375.1
NC_012560:4311906:433028243302824330758477Azotobacter vinelandii DJ, complete genomeProkaryotic transcription elongation factor GreA2e-1375.1
NC_021150:4311902:433027843302784330754477Azotobacter vinelandii CA6, complete genometranscription elongation factor GreA2e-1375.1
NC_008593:153014:163989163989164468480Clostridium novyi NT, complete genometranscription elongation factor greA2e-1375.1
NC_015687:3326461:334510833451083345584477Clostridium acetobutylicum DSM 1731 chromosome, complete genometranscription elongation factor GreA2e-1375.1
NC_003030:3324834:334348233434823343958477Clostridium acetobutylicum ATCC 824, complete genometranscription elongation factor GreA2e-1375.1
NC_010184:4219257:422221142222114222738528Bacillus weihenstephanensis KBAB4, complete genometranscription elongation factor GreA2e-1374.7
NC_002978:618723:641759641759642253495Wolbachia endosymbiont of Drosophila melanogaster, complete genometranscription elongation factor GreA2e-1374.7
NC_017259:388000:407534407534408013480Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,transcription elongation factor GreA3e-1374.3
NC_012416:531772:536755536755537249495Wolbachia sp. wRi, complete genometranscription elongation factor GreA3e-1374.3
NC_004842:1031020:105108510510851051609525Anaplasma marginale str. St. Maries, complete genometranscription elongation factor greA3e-1374.3
NC_014328:4471995:449191744919174492372456Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcription elongation factor3e-1374.3
NC_015519:245036:247769247769248245477Tepidanaerobacter sp. Re1 chromosome, complete genometranscription elongation factor GreA3e-1374.3
NC_006833:409599:414560414560415054495Wolbachia endosymbiont strain TRS of Brugia malayi, completeTranscription elongation factor, GreA3e-1374.3
NC_015565:173774:179285179285179761477Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completetranscription elongation factor GreA3e-1373.9
NC_010320:819326:842047842047842520474Thermoanaerobacter sp. X514 chromosome, complete genometranscription elongation factor GreA6e-1373.6
NC_004344:257471:274883274883275359477Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein7e-1373.2
NC_013416:939668:941271941271941747477Aggregatibacter actinomycetemcomitans D11S-1, complete genometranscription elongation factor GreA1e-1272.4
NC_010981:1243888:126900012690001269494495Wolbachia pipientis, complete genometranscription elongation factor GreA2e-1272
NC_020075:114790:116759116759117235477Candidatus Blochmannia chromaiodes str. 640, complete genometranscription elongation factor GreA2e-1272
NC_007907:225948:234379234379234849471Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-1272
NC_015425:163000:174106174106174561456Clostridium botulinum BKT015925 chromosome, complete genometranscription elongation factor GreA2e-1271.6
NC_009012:3421000:342416634241663424645480Clostridium thermocellum ATCC 27405, complete genometranscription elongation factor GreA3e-1271.2
NC_007292:113396:116889116889117365477Candidatus Blochmannia pennsylvanicus str. BPEN, complete genometranscription elongation factor3e-1270.9
NC_011146:2200142:220350022035002203976477Geobacter bemidjiensis Bem, complete genometranscription elongation factor GreA3e-1270.9
NC_011898:426951:448093448093448569477Clostridium cellulolyticum H10, complete genometranscription elongation factor GreA4e-1270.5
NC_020291:117983:141165141165141647483Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscription elongation factor GreA4e-1270.5
NC_014654:2138794:215410021541002154582483Halanaerobium sp. 'sapolanicus' chromosome, complete genometranscription elongation factor GreA6e-1270.1
NC_012918:2668031:268448226844822684958477Geobacter sp. M21 chromosome, complete genometranscription elongation factor GreA6e-1270.1
NC_010723:173280:189795189795190277483Clostridium botulinum E3 str. Alaska E43, complete genometranscription elongation factor GreA8e-1269.7
NC_010830:923266:943068943068943541474Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein9e-1269.3
NC_002162:333303:348924348924349394471Ureaplasma parvum serovar 3 str. ATCC 700970, complete genometranscription elongation factor1e-1169.3
NC_014377:149288:156753156753157229477Thermosediminibacter oceani DSM 16646 chromosome, complete genomeGreA/GreB family elongation factor2e-1168.6
NC_009494:3119997:314076331407633141245483Legionella pneumophila str. Corby chromosome, complete genometranscription elongation factor GreA3e-1167.8
NC_014125:3054000:307473530747353075202468Legionella pneumophila 2300/99 Alcoy chromosome, complete genometranscription elongation factor GreA3e-1167.8
NC_019904:186056:197731197731198204474Echinicola vietnamensis DSM 17526 chromosome, complete genometranscription elongation factor GreA4e-1167.4
NC_016811:2903871:292463829246382925120483Legionella pneumophila subsp. pneumophila ATCC 43290 chromosome,transcription elongation factor GreA4e-1167.4
NC_002942:2943206:296397329639732964455483Legionella pneumophila subsp. pneumophila str. Philadelphia 1,transcription elongation factor GreA4e-1167.4
NC_006368:3028286:305123230512323051714483Legionella pneumophila str. Paris, complete genometranscription elongation factor GreA4e-1167.4
NC_014909:86000:108865108865109347483Candidatus Blochmannia vafer str. BVAF chromosome, complete genometranscription elongation factor GreA5e-1167
NC_008262:2649289:268678126867812687257477Clostridium perfringens SM101, complete genometranscription elongation factor GreA7e-1166.6
NC_003485:316679:337232337232337762531Streptococcus pyogenes MGAS8232, complete genometranscription elongation factor GreA8e-1166.2
NC_005061:96536:104321104321104809489Candidatus Blochmannia floridanus, complete genometranscription elongation factor, cleaves 3' nucleotide of paused mRNA1e-1065.9
NC_011025:183287:190603190603191082480Mycoplasma arthritidis 158L3-1, complete genometranscription elongation factor1e-1065.9
NC_019903:83857:939689396894438471Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,transcription elongation factor GreA1e-1065.5
NC_018867:361423:365767365767366237471Dehalobacter sp. CF chromosome, complete genomeTranscription elongation factor GreA1e-1065.5
NC_020995:2255521:225885522588552259334480Enterococcus casseliflavus EC20, complete genometranscription elongation factor greA3e-1064.3
NC_007503:2098980:212128221212822121755474Carboxydothermus hydrogenoformans Z-2901, complete genometranscription elongation factor GreA4e-1063.9
NC_013895:1086500:109919910991991099681483Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completetranscription elongation factor GreA1e-0962.4
NC_017271:3057161:306004130600413060547507Xanthomonas campestris pv. raphani 756C chromosome, completetranscription elongation factor GreB2e-0962
NC_014960:1735786:178532517853251785792468Anaerolinea thermophila UNI-1, complete genometranscription elongation factor GreA2e-0962
NC_016584:85543:914739147391943471Desulfosporosinus orientis DSM 765 chromosome, complete genometranscription elongation factor GreA1e-0962
NC_012997:3185248:320821132082113208729519Teredinibacter turnerae T7901, complete genometranscription elongation factor GreB3e-0961.2
NC_006370:166000:187189187189187659471Photobacterium profundum SS9 chromosome 1, complete sequencetranscription elongation factor GreB4e-0960.8
NC_010718:128423:133411133411133905495Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscription elongation factor GreA2e-0858.5
NC_012806:818592:833987833987834472486Mycoplasma conjunctivae, complete genomeTranscription elongation factor3e-0857.8
NC_008322:4611000:461745746174574617942486Shewanella sp. MR-7, complete genometranscription elongation factor GreB5e-0857
NC_016111:4115097:411698941169894117486498Streptomyces cattleya NRRL 8057, complete genomeTranscription elongation factor greA2e-0754.7
NC_008095:3719441:373264237326423733172531Myxococcus xanthus DK 1622, complete genometranscription elongation factor GreB4e-0753.9
NC_017093:835260:855594855594856088495Actinoplanes missouriensis 431, complete genomeputative transcription elongation factor8e-0753.1
NC_009654:4253431:425643942564394257029591Marinomonas sp. MWYL1, complete genometranscription elongation factor GreB9e-0752.8
NC_015738:838715:853221853221853691471Eggerthella sp. YY7918, complete genomehypothetical protein1e-0652
NC_015554:4824000:483108048310804831559480Alteromonas sp. SN2 chromosome, complete genometranscription elongation factor GreB5e-0650.4
NC_013124:1606879:160831316083131608795483Acidimicrobium ferrooxidans DSM 10331, complete genomeGreA/GreB family elongation factor5e-0650.1