Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:957890 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
957890958696807dihydrodipicolinate reductaseQuickGO ontologyBLASTP
9589559600911137carbamoyl-phosphate synthase small subunitQuickGO ontologyBLASTP
9602219634423222carbamoyl-phosphate synthase large subunitQuickGO ontologyBLASTP
963439963915477transcription elongation factor GreAQuickGO ontologyBLASTP
963872964348477hypothetical protein
964361964669309hypothetical proteinBLASTP
964774965403630ribosomal RNA large subunit methyltransferase JQuickGO ontologyBLASTP
9656059675091905ATP-dependent metalloprotease FtsHQuickGO ontologyBLASTP
967518968369852dihydropteroate synthaseQuickGO ontologyBLASTP
9683869697231338phosphoglucosamine mutaseQuickGO ontologyBLASTP
969790970545756triosephosphate isomeraseQuickGO ontologyBLASTP
971334971810477hypothetical proteinBLASTP
9718589733391482transcription elongation factor NusAQuickGO ontologyBLASTP
9733679758832517translation initiation factor IF-2QuickGO ontologyBLASTP
976043976444402ribosome-binding factor AQuickGO ontologyBLASTP
976448977365918tRNA pseudouridine synthase BQuickGO ontologyBLASTP
97748197775027030S ribosomal protein S15QuickGO ontologyBLASTP
9779489800592112polyribonucleotide nucleotidyltransferaseQuickGO ontologyBLASTP