Pre_GI Gene

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Host: NC_009012 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009012:3421000 Clostridium thermocellum ATCC 27405, complete genome

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
342105734228081752glycoside hydrolase family 18QuickGO ontologyBLASTP
34228843423837954hypothetical protein
34241663424645480transcription elongation factor GreAQuickGO ontologyBLASTP
34249943425308315anti-sigma-factor antagonistQuickGO ontologyBLASTP
34253213425713393putative anti-sigma regulatory factor serinethreonine protein kinaseQuickGO ontologyBLASTP
34257163426474759RNA polymerase sigma 28 subunitQuickGO ontologyBLASTP
34266413427075435putative anti-sigma regulatory factor serinethreonine protein kinaseQuickGO ontologyBLASTP
34275933429113152116S ribosomal RNAQuickGO ontologyBLASTP
3429222342929877tRNA-IleQuickGO ontology
34295003432407290823S ribosomal RNAQuickGO ontologyBLASTP
343249734326131175S ribosomal RNAQuickGO ontologyBLASTP
34330953433406312ribosomal protein S10QuickGO ontologyBLASTP
34335093434147639ribosomal protein L3QuickGO ontologyBLASTP
34341713434797627ribosomal protein L4L1eQuickGO ontologyBLASTP
34347973435150354Ribosomal protein L25L23QuickGO ontologyBLASTP
34351943436021828ribosomal protein L2QuickGO ontologyBLASTP
34360783436362285ribosomal protein S19QuickGO ontologyBLASTP
34364923436869378ribosomal protein L22QuickGO ontologyBLASTP
34368893437569681ribosomal protein S3QuickGO ontologyBLASTP
34375563437993438ribosomal protein L16QuickGO ontologyBLASTP
34379833438186204ribosomal protein L29QuickGO ontologyBLASTP
34382133438470258ribosomal protein S17QuickGO ontologyBLASTP
34384953438863369ribosomal protein L14QuickGO ontologyBLASTP