Pre_GI: BLASTP Hits

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Query: NC_007953:811500:823033 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 823033, End: 823689, Length: 657

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007974:2097334:213197321319732132776804Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH4e-47187
NC_007974:2097334:213104121310412131952912Ralstonia metallidurans CH34 chromosome 2, complete sequenceregulatory protein GntR, HTH2e-25115
NC_016604:3137694:313854031385403139238699Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator2e-1789
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator8e-1787
NC_015376:3631392:363629736362973637145849Burkholderia gladioli BSR3 chromosome chromosome 2, completeGntR domain protein7e-1684
NC_013501:1337489:134428613442861345053768Rhodothermus marinus DSM 4252, complete genomeGntR domain protein3e-1478.6
NC_008148:1859888:187784118778411878557717Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein2e-1375.9
NC_015690:3269000:327636032763603277091732Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator2e-1375.9
NC_016935:3819500:382680038268003827531732Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator2e-1375.5
NC_012125:4716000:474604547460454746818774Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor UxuR1e-1273.6
NC_004631:4687270:470799047079904708763774Salmonella enterica subsp. enterica serovar Typhi Ty2, completeuxu operon transcriptional regulator1e-1273.6
NC_011147:4460726:449757144975714498344774Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional repressor UxuR1e-1273.6
NC_013173:2261396:226881722688172269518702Desulfomicrobium baculatum DSM 4028, complete genomeGntR domain protein1e-1273.2
NC_015064:1355065:137103413710341371891858Acidobacterium sp. MP5ACTX9 chromosome, complete genomeGntR domain protein1e-1273.2
NC_015761:4355335:437435443743544375127774Salmonella bongori NCTC 12419, complete genomeuxu operon transcriptional regulator2e-1272.4
NC_006905:4638707:466873046687304669503774Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for uxu operon2e-1272.4
NC_012880:1091486:111621711162171116951735Dickeya dadantii Ech703, complete genomeGntR domain protein2e-1272.4
NC_010511:871905:873389873389874153765Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator3e-1272
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator3e-1272
NC_007722:2993852:301451730145173015245729Erythrobacter litoralis HTCC2594, complete genomeregulatory protein GntR, HTH4e-1271.6
NC_010102:4745949:476664047666404767365726Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-1270.5
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein8e-1270.5
NC_004088:3186954:320871332087133209513801Yersinia pestis KIM, complete genomeregulator for uxu operon2e-1169.3
NC_017265:2807302:282906228290622829862801Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding transcriptional repressor2e-1169.3
NC_010465:3046904:306868030686803069423744Yersinia pseudotuberculosis YPIII, complete genomeGntR domain protein2e-1169.3
NC_008149:3022970:304472130447213045464744Yersinia pestis Nepal516, complete genometranscriptional regulatory protein2e-1169.3
NC_009708:3035798:305763230576323058375744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeuxu operon transcriptional regulator2e-1169.3
NC_017160:1299733:132130713213071322050744Yersinia pestis D182038 chromosome, complete genometranscriptional regulator2e-1169.3
NC_005810:1413305:143504514350451435806762Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein2e-1168.9
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator3e-1168.9
NC_008253:4817864:485861648586164859389774Escherichia coli 536, complete genomeuxu operon transcriptional regulator3e-1168.6
NC_016612:361417:361417361417362190774Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator protein3e-1168.6
NC_007946:4875997:491812649181264918899774Escherichia coli UTI89, complete genomeUxuR uxu operon transcriptional regulator3e-1168.6
NC_021171:2019755:202131920213192022035717Bacillus sp. 1NLA3E, complete genometranscriptional regulator5e-1167.8
NC_019673:7797666:780755578075557808226672Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, GntR family8e-1167.4
NC_011832:913994:952978952978953670693Candidatus Methanosphaerula palustris E1-9c, complete genomeGntR domain protein7e-1167.4
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme6e-1167.4
NC_007606:3755155:377484737748473775623777Shigella dysenteriae Sd197, complete genometranscriptional regulator8e-1167
NC_011745:5114500:513677251367725137545774Escherichia coli ED1a chromosome, complete genomeDNA-binding transcriptional repressor UxuR9e-1167
NC_007613:4403070:442852244285224429295774Shigella boydii Sb227, complete genomeregulator for uxu operon9e-1167
NC_013416:1429881:143955414395541440309756Aggregatibacter actinomycetemcomitans D11S-1, complete genomeD-mannonate oxidoreductase1e-1066.6
NC_016513:1761830:177384217738421774597756Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeD-mannonate oxidoreductase1e-1066.6
NC_016935:4435759:444325444432544444000747Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-1066.6
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH2e-1066.2
NC_014364:815346:820369820369821073705Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein3e-1065.5
NC_015656:1876627:188194718819471882705759Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR domain-containing protein3e-1065.5
NC_010184:4425676:443665044366504437294645Bacillus weihenstephanensis KBAB4, complete genomeregulatory protein GntR HTH4e-1065.1
NC_008596:4196194:420135942013594202099741Mycobacterium smegmatis str. MC2 155, complete genomeGntR-family protein transcriptional regulator3e-1065.1
NC_014966:1668822:169026116902611691052792Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator3e-1065.1
NC_007530:4400152:441123244112324411876645Bacillus anthracis str. 'Ames Ancestor', complete genometranscriptional regulator, gntr family5e-1064.7
NC_003997:4399067:441110544111054411749645Bacillus anthracis str. Ames, complete genometranscriptional regulator, GntR family5e-1064.7
NC_012472:4400420:440866344086634409307645Bacillus cereus 03BB102, complete genometranscriptional regulator, GntR family5e-1064.7
NC_006274:4448293:445951244595124460156645Bacillus cereus E33L, complete genometranscriptional regulator, GntR family5e-1064.7
NC_014335:4327584:433961243396124340256645Bacillus cereus biovar anthracis str. CI chromosome, completeGntR family transcriptional regulator5e-1064.7
NC_005945:4399756:441179444117944412438645Bacillus anthracis str. Sterne, complete genometranscriptional regulator, GntR family5e-1064.7
NC_011658:4379274:438888943888894389533645Bacillus cereus AH187 chromosome, complete genomeGntR family transcriptional regulator5e-1064.7
NC_011773:4461758:447283844728384473482645Bacillus cereus AH820 chromosome, complete genomeGntR family transcriptional regulator5e-1064.7
NC_012659:4399094:441113244111324411776645Bacillus anthracis str. A0248, complete genomeGntR family transcriptional regulator5e-1064.7
NC_009674:3344000:335662333566233357240618Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeregulatory protein GntR HTH4e-1064.7
NC_012214:897206:915170915170915934765Erwinia pyrifoliae Ep1/96, complete genomePyruvate dehydrogenase complex repressor4e-1064.7
NC_017200:4401945:441506644150664415710645Bacillus thuringiensis serovar finitimus YBT-020 chromosome,GntR family transcriptional regulator4e-1064.7
NC_015167:313506:317055317055317759705Cellulophaga lytica DSM 7489 chromosome, complete genomeGntR domain-containing protein5e-1064.7
NC_014171:4447856:445992144599214460565645Bacillus thuringiensis BMB171 chromosome, complete genomeGntR family transcriptional regulator5e-1064.7
NC_016771:4333000:434267243426724343316645Bacillus cereus NC7401, complete genomeGntR family transcriptional regulator5e-1064.7
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family5e-1064.3
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein5e-1064.3
NC_013971:817284:839648839648840412765Erwinia amylovora ATCC 49946 chromosome, complete genomepyruvate dehydrogenase complex repressor6e-1064.3
CP002185:4791811:481706548170654817790726Escherichia coli W, complete genomeDNA-binding transcriptional repressor6e-1064.3
NC_004337:3590323:375165237516523752428777Shigella flexneri 2a str. 301, complete genometranscriptional regulator1e-0963.5
NC_012759:3648500:366540336654033666179777Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor LldR1e-0963.5
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator1e-0963.5
NC_015172:1471501:147493214749321475636705Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeregulatory protein GntR HTH9e-1063.5
NC_010694:891967:909868909868910632765Erwinia tasmaniensis, complete genomePyruvate dehydrogenase complex repressor1e-0963.2
NC_013716:5020204:504139450413945042170777Citrobacter rodentium ICC168, complete genomeexu regulon transcriptional regulator1e-0963.2
NC_014532:349384:349384349384350133750Halomonas elongata DSM 2581, complete genometranscriptional regulator, GntR family2e-0962.8
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein2e-0962.4
NC_015656:454500:467927467927468721795Frankia symbiont of Datisca glomerata chromosome, complete genomeregulatory protein GntR2e-0962.4
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family2e-0962.4
NC_021171:4549673:455230045523004552956657Bacillus sp. 1NLA3E, complete genomeGntR family transcriptional regulator5e-0961.2
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein4e-0961.2
NC_010515:1205258:122268812226881223482795Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceGntR domain protein6e-0960.8
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator7e-0960.8
NC_014041:1084246:110089111008911101589699Zunongwangia profunda SM-A87 chromosome, complete genomeputative GntR family regulatory protein7e-0960.8
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein8e-0960.5
NC_015726:3452232:345223234522323453200969Cupriavidus necator N-1 chromosome 1, complete sequenceGntR family transcriptional regulator8e-0960.5
NC_013716:4824541:484752448475244848306783Citrobacter rodentium ICC168, complete genomeGntR-family transcriptional regulator9e-0960.5
NC_008699:2260606:228173422817342282474741Nocardioides sp. JS614, complete genomeGntR domain protein1e-0860.1
NC_011001:302500:311448311448312281834Burkholderia cenocepacia J2315 chromosome 2, complete sequenceepidemic strain marker regulator1e-0860.1
NC_014364:2751662:275653427565342757214681Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein1e-0860.1
NC_015314:89815:101357101357102130774Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, completeGntR domain-containing protein1e-0859.7
NC_016800:2127200:212885421288542129552699Corynebacterium diphtheriae BH8 chromosome, complete genomeputative transcriptional regulator2e-0859.3
NC_016782:2088858:208885820888582089556699Corynebacterium diphtheriae 241 chromosome, complete genomeputative transcriptional regulator2e-0859.3
NC_015733:3595882:361682836168283617592765Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC2e-0859.3
NC_009254:329700:350762350762351601840Burkholderia vietnamiensis G4 chromosome 3, complete sequenceGntR family transcriptional regulator2e-0858.9
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator3e-0858.9
NC_015138:272500:290965290965291732768Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeGntR domain-containing protein3e-0858.9
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator4e-0858.5
NC_014323:4619344:464992446499244650634711Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein4e-0858.5
NC_016779:4361140:437332243733224373909588Bacillus cereus F837/76 chromosome, complete genomeGntR family transcriptional regulator4e-0858.2
NC_011725:4562709:457098345709834571552570Bacillus cereus B4264 chromosome, complete genomeGntR family transcriptional regulator4e-0858.2
NC_016048:3667890:367938436793843680112729Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator5e-0858.2
NC_008268:4669530:469303346930334693788756Rhodococcus sp. RHA1, complete genometranscriptional regulator, GntR family8e-0857.4
NC_007974:2097334:215043921504392151161723Ralstonia metallidurans CH34 chromosome 2, complete sequenceGntR-like protein9e-0857
NC_015672:788417:811724811724812503780Flexistipes sinusarabici DSM 4947 chromosome, complete genomeregulatory protein GntR1e-0757
NC_015376:1185000:118696811869681187711744Burkholderia gladioli BSR3 chromosome chromosome 2, completeGntR-like protein1e-0756.6
NC_012912:844339:850632850632851399768Dickeya zeae Ech1591, complete genomeGntR domain protein1e-0756.6
NC_011663:4579777:458252545825254583277753Shewanella baltica OS223 chromosome, complete genometranscriptional regulator PdhR2e-0755.8
NC_009665:4675289:468162246816224682374753Shewanella baltica OS185 chromosome, complete genometranscriptional regulator PdhR2e-0755.8
NC_015733:3736104:378283237828323783611780Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC2e-0755.8
NC_007712:433500:437760437760438524765Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator2e-0755.8
NC_008314:2744553:277746027774602778158699Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, GntR-family2e-0755.8
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein3e-0755.5
NC_008595:2546696:257775925777592578541783Mycobacterium avium 104, complete genomeregulatory protein GntR, HTH5e-0754.7
NC_016947:1311264:133507813350781335860783Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein GntR5e-0754.7
NC_011751:3453683:349481534948153495549735Escherichia coli UMN026 chromosome, complete genometranscriptional regulator4e-0754.7
NC_011745:4862218:487607548760754876809735Escherichia coli ED1a chromosome, complete genomeTranscriptional regulator6e-0754.3
NC_010676:2720068:273288227328822733655774Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein6e-0754.3
NC_014364:394899:435427435427436113687Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein8e-0753.9
NC_003198:1463253:147775414777541478545792Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein1e-0653.1
NC_003197:1611302:161647016164701617261792Salmonella typhimurium LT2, complete genomeputative regulatory protein1e-0653.1
NC_015761:1488807:149410414941041494778675Salmonella bongori NCTC 12419, complete genomeregulatory protein1e-0653.1
NC_015724:339500:343813343813344547735Cupriavidus necator N-1 plasmid BB2p, complete sequenceGntR family transcriptional regulator1e-0653.1
NC_015434:3581001:358911635891163589820705Verrucosispora maris AB-18-032 chromosome, complete genomeGntR family transcriptional regulator1e-0653.1
NC_016612:178864:186603186603187319717Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_011365:1865687:188920618892061889964759Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeGntR family transcriptional regulator2e-0652.8
NC_015145:3236445:327180532718053272530726Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometranscriptional regulator2e-0652.8
NC_011274:1544653:157101315710131571732720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91GntR family regulatory protein2e-0652.4
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH2e-0652.4
NC_011094:1584038:158403815840381584709672Salmonella enterica subsp. enterica serovar Schwarzengrund strregulatory protein3e-0652
NC_016856:1621279:162656716265671627238672Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein3e-0652
NC_016860:1614280:161428016142801614951672Salmonella enterica subsp. enterica serovar Typhimurium strputative regulatory protein3e-0652
NC_016027:2512297:252258525225852523292708Gluconacetobacter xylinus NBRC 3288, complete genomeGntR family transcriptional regulator3e-0651.6
NC_010125:1011430:101791310179131018671759Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator protein, GntR family4e-0651.6
NC_010407:3132683:314793331479333148604672Clavibacter michiganensis subsp. sepedonicus chromosome, completeGntR family transcriptional regulator5e-0651.2
NC_007907:5185510:522868352286835229384702Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0651.2
NC_014834:614890:633477633477634205729Rhodopseudomonas palustris DX-1 chromosome, complete genomeGntR family transcriptional regulator5e-0651.2
NC_017195:517344:536111536111536803693Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, GntR family6e-0650.8
NC_014364:3707311:372723137272313728010780Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeregulatory protein GntR HTH7e-0650.8
NC_008786:3045770:3061342306134230624811140Verminephrobacter eiseniae EF01-2, complete genomeGntR domain protein9e-0650.4
NC_014306:2518996:252033425203342521041708Erwinia billingiae Eb661, complete genomeTranscriptional regulator, GntR family1e-0550.1