Pre_GI Gene

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Host: NC_003197 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:1611302 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
16113021612045744putative NiFe hydrogenase 1 b-type cytochrome subunitQuickGO ontologyBLASTP
161199616137981803putative hydrogenase-1 large subunitQuickGO ontologyBLASTP
161380116149041104putative hydrogenase-1 small subunitQuickGO ontologyBLASTP
161533316164241092putative hydrolaseQuickGO ontologyBLASTP
16164701617261792putative regulatory proteinQuickGO ontologyBLASTP
161732016183451026putative zinc-binding dehydrogenaseQuickGO ontologyBLASTP
161832016196061287putative transport proteinQuickGO ontologyBLASTP
161978316213391557PhoPQ-regulated proteinQuickGO ontologyBLASTP
162140916226501242putative multidrug efflux proteinQuickGO ontologyBLASTP
162264016241481509hypothetical proteinBLASTP
16241931624681489putative transcriptional regulatorQuickGO ontologyBLASTP
162487416259531080putative S-adenosylmethioninetRNA-ribosyltransferase-isomeraseQuickGO ontologyBLASTP
16260051626394390putative translation initiation inhibitorQuickGO ontologyBLASTP
16265651626849285putative cytoplasmic proteinQuickGO ontologyBLASTP
16268391627087249putative cytoplasmic proteinQuickGO ontologyBLASTP
16274441627776333hypothetical proteinBLASTP
16279191628827909putative cytoplasmic proteinQuickGO ontologyBLASTP
163040516318711467putative coiled-coil proteinQuickGO ontologyBLASTP
163213016331371008putative transcriptional regulatorQuickGO ontologyBLASTP