Query: NC_003197:1611302 Salmonella typhimurium LT2, complete genome
Start: 1611302, End: 1633137, Length: 21836
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003198:1463253 | 1463253 | 1485032 | 21780 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 0 | 21810 | BLASTN svg | BLASTP svg |
NC_011149:1578451 | 1578451 | 1598115 | 19665 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 0 | 18190 | BLASTN svg | BLASTP svg |
NC_010067:1414000 | 1414000 | 1436804 | 22805 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 0 | 5650 | BLASTN svg | BLASTP svg |
NC_011740:2737467 | 2737467 | 2759140 | 21674 | Escherichia fergusonii ATCC 35469, complete genome | 0 | 698 | BLASTN svg | BLASTP svg |
NC_007946:1632025 | 1632025 | 1658171 | 26147 | Escherichia coli UTI89, complete genome | 3e-55 | 224 | BLASTN svg | BLASTP svg |
NC_008687:256692 | 256692 | 286079 | 29388 | Paracoccus denitrificans PD1222 chromosome 2, complete sequence | 2e-34 | 155 | BLASTN svg | BLASTP svg |
NC_009720:2424975* | 2424975 | 2445207 | 20233 | Xanthobacter autotrophicus Py2, complete genome | 5e-23 | 117 | BLASTN svg | BLASTP svg |
NC_010067:1116148 | 1116148 | 1139330 | 23183 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_007973:1411714 | 1411714 | 1442045 | 30332 | Ralstonia metallidurans CH34 chromosome 1, complete sequence | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_013851:2610847 | 2610847 | 2636058 | 25212 | Allochromatium vinosum DSM 180 chromosome, complete genome | 8e-19 | 103 | BLASTN svg | BLASTP svg |
NC_009648:1882500 | 1882500 | 1906776 | 24277 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
CP002797:1591000 | 1591000 | 1609300 | 18301 | Escherichia coli NA114, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010634:2004653 | 2004653 | 2028874 | 24222 | Yersinia pseudotuberculosis PB1/+, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013716:1618249 | 1618249 | 1643078 | 24830 | Citrobacter rodentium ICC168, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013851:2317091* | 2317091 | 2338933 | 21843 | Allochromatium vinosum DSM 180 chromosome, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015224:2473582 | 2473582 | 2492625 | 19044 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_000913:1570431 | 1570431 | 1596110 | 25680 | Escherichia coli K12, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_002655:1966464 | 1966464 | 1989571 | 23108 | Escherichia coli O157:H7 EDL933, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008253:1534840 | 1534840 | 1556119 | 21280 | Escherichia coli 536, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_009800:1589000 | 1589000 | 1614908 | 25909 | Escherichia coli HS, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010473:1661000 | 1661000 | 1685735 | 24736 | Escherichia coli str. K-12 substr. DH10B, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010498:4821519* | 4821519 | 4844970 | 23452 | Escherichia coli SMS-3-5, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_020181:1344259 | 1344259 | 1362825 | 18567 | Enterobacter aerogenes EA1509E, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
AC_000091:1574000 | 1574000 | 1599800 | 25801 | Escherichia coli W3110 DNA, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |