Pre_GI: BLASTP Hits

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Query: NC_004129:957890:976043 Pseudomonas fluorescens Pf-5, complete genome

Start: 976043, End: 976444, Length: 402

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021150:4311902:431882743188274319216390Azotobacter vinelandii CA6, complete genomeribosome-binding factor A9e-47185
NC_012560:4311906:431883143188314319220390Azotobacter vinelandii DJ, complete genomeribosome-binding factor A9e-47185
NC_012880:3915500:391701339170133917411399Dickeya dadantii Ech703, complete genomeribosome-binding factor A2e-31134
NC_007645:1245927:125429212542921254699408Hahella chejuensis KCTC 2396, complete genomeribosome-binding factor A4e-30129
NC_016603:3475843:348437734843773484778402Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomeribosome-binding factor A2e-26117
NC_003116:1488576:149217314921731492544372Neisseria meningitidis Z2491, complete genomeribosome-binding factor A1e-25115
NC_017512:1264542:126813912681391268510372Neisseria meningitidis WUE 2594, complete genomeribosome-binding factor A1e-25115
NC_017517:1377617:138189313818931382264372Neisseria meningitidis M01-240355 chromosome, complete genomeribosome-binding factor A1e-25115
NC_017505:1338661:134487613448761345247372Neisseria meningitidis alpha710 chromosome, complete genomeribosomal-binding factor A9e-26115
NC_006369:3058000:306698330669833067354372Legionella pneumophila str. Lens, complete genomeRibosome-binding factor A8e-26115
NC_013016:1257942:126421012642101264581372Neisseria meningitidis alpha14 chromosome, complete genomeribosome-binding factor A6e-26115
NC_013861:311908:331330331330331695366Legionella longbeachae NSW150, complete genomeRibosome-binding factor A6e-26115
NC_011035:1033942:103821310382131038584372Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeribosome-binding factor A3e-25114
NC_017516:917817:932901932901933272372Neisseria meningitidis H44/76 chromosome, complete genomeribosome-binding factor A3e-25113
NC_002946:618439:634076634076634447372Neisseria gonorrhoeae FA 1090, complete genomeribosome-binding factor A4e-25113
NC_017511:950411:954043954043954414372Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeribosome-binding factor A4e-25113
NC_005061:96536:115697115697116050354Candidatus Blochmannia floridanus, complete genomeribosome-binding factor A (P15B protein)3e-24110
NC_011830:3904034:390969439096943910071378Desulfitobacterium hafniense DCB-2, complete genomeribosome-binding factor A2e-23107
NC_007907:2879568:288240728824072882784378Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-23107
NC_016632:74569:843838438384793411Serratia symbiotica str. 'Cinara cedri' chromosome, completeribosome-binding factor A6e-23105
NC_017353:1699652:170622417062241706571348Staphylococcus lugdunensis N920143, complete genomeputative ribosome-binding factor A8e-23105
NC_014152:1430156:144493014449301445292363Thermincola sp. JR, complete genomeribosome-binding factor A1e-22105
NC_005139:2731623:274573327457332746179447Vibrio vulnificus YJ016 chromosome I, complete sequenceribosome-binding factor A2e-22104
NC_004459:1679335:168215816821581682553396Vibrio vulnificus CMCP6 chromosome I, complete sequenceribosome-binding factor A2e-22104
NC_014965:670115:674450674450674845396Vibrio vulnificus MO6-24/O chromosome I, complete sequenceribosome-binding factor A2e-22104
NC_016893:563890:578339578339578692354Wigglesworthia glossinidia endosymbiont of Glossina morsitans30s ribosome binding factor1e-22104
NC_002528:404545:415223415223415585363Buchnera aphidicola str. APS (Acyrthosiphon pisum), completeribosome-binding factor A2e-22103
NC_004461:921364:951699951699952049351Staphylococcus epidermidis ATCC 12228, complete genomeribosome-binding factor A2e-22103
NC_012121:897866:915362915362915709348Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative ribosome-binding factor A2e-22103
NC_007622:1214629:122828712282871228637351Staphylococcus aureus RF122, complete genomeribosome-binding factor A9e-22102
NC_002952:1291444:130510213051021305452351Staphylococcus aureus subsp. aureus MRSA252, complete genomeribosome-binding factor A9e-22102
NC_009782:1327340:134099713409971341347351Staphylococcus aureus subsp. aureus Mu3, complete genomeribosome-binding factor A9e-22102
NC_017338:1234077:124542512454251245775351Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeribosome-binding factor A (P15B PROTEIN)9e-22102
NC_017341:1291583:130519813051981305590393Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,ribosome-binding factor A (P15B PROTEIN)8e-22102
NC_014103:3985897:399506039950603995425366Bacillus megaterium DSM319 chromosome, complete genomeribosome-binding factor A6e-22102
NC_005945:3615623:362484736248473625203357Bacillus anthracis str. Sterne, complete genomeribosome-binding factor A1e-21101
NC_003997:3617000:362415236241523624508357Bacillus anthracis str. Ames, complete genomeribosome-binding factor A1e-21101
NC_007530:3616828:362427936242793624635357Bacillus anthracis str. 'Ames Ancestor', complete genomeribosome-binding factor A1e-21101
NC_012659:3617000:362417936241793624535357Bacillus anthracis str. A0248, complete genomeribosome-binding factor A1e-21101
NC_004344:257471:264696264696265073378Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein4e-21100
NC_011772:3787500:379458137945813794937357Bacillus cereus G9842, complete genomeribosome-binding factor A3e-21100
NC_010184:3675424:368290436829043683260357Bacillus weihenstephanensis KBAB4, complete genomeribosome-binding factor A3e-21100
NC_004722:3777907:378498037849803785336357Bacillus cereus ATCC 14579, complete genomeribosome-binding factor A3e-21100
NC_011725:3821789:382886538288653829221357Bacillus cereus B4264 chromosome, complete genomeribosome-binding factor A3e-21100
NC_014171:3701051:370812537081253708481357Bacillus thuringiensis BMB171 chromosome, complete genomeribosome-binding factor A3e-21100
NC_017208:3816753:382421538242153824571357Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeribosome-binding factor A3e-21100
NC_015589:1899329:191995519199551920317363Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeribosome-binding factor A2e-21100
NC_011528:535680:551729551729552088360Coxiella burnetii CbuK_Q154, complete genomeribosome-binding factor A9e-2199
NC_002971:1379567:138182813818281382187360Coxiella burnetii RSA 493, complete genomeribosome-binding factor A9e-2199
NC_010117:1461502:146240914624091462768360Coxiella burnetii RSA 331, complete genomeribosome-binding factor A9e-2199
NC_016627:2799453:281620028162002816547348Clostridium clariflavum DSM 19732 chromosome, complete genomeribosome-binding factor A8e-2199
NC_009674:2551759:255888025588802559236357Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeribosome-binding factor A1e-2098.6
NC_012472:3661912:366898536689853669341357Bacillus cereus 03BB102, complete genomeribosome-binding factor A1e-2098.6
NC_006274:3697255:370470537047053705061357Bacillus cereus E33L, complete genomeribosome-binding factor A1e-2098.6
NC_005957:3638750:364582336458233646179357Bacillus thuringiensis serovar konkukian str. 97-27, completeribosome-binding factor A1e-2098.6
NC_014335:3567931:357500435750043575360357Bacillus cereus biovar anthracis str. CI chromosome, completeribosome-binding factor A1e-2098.6
NC_008600:3643905:365097836509783651334357Bacillus thuringiensis str. Al Hakam, complete genomeribosome-binding factor A1e-2098.6
NC_016779:3579743:358681635868163587172357Bacillus cereus F837/76 chromosome, complete genomeRibosome-binding factor A1e-2098.6
NC_011527:525759:545092545092545451360Coxiella burnetii CbuG_Q212, complete genomeribosome-binding factor A1e-2098.6
NC_011773:3651963:365903636590363659392357Bacillus cereus AH820 chromosome, complete genomeribosome-binding factor A9e-2198.6
NC_011658:3603009:361219636121963612552357Bacillus cereus AH187 chromosome, complete genomeribosome-binding factor A1e-2098.2
NC_016771:3555506:356469335646933565049357Bacillus cereus NC7401, complete genomeribosome-binding factor A1e-2098.2
NC_017200:3655496:366588236658823666238357Bacillus thuringiensis serovar finitimus YBT-020 chromosome,ribosome-binding factor A1e-2098.2
NC_003909:3587695:359688335968833597239357Bacillus cereus ATCC 10987, complete genomeribosome-binding factor A1e-2098.2
NC_011969:3549000:355615835561583556514357Bacillus cereus Q1 chromosome, complete genomeribosome-binding factor a1e-2098.2
NC_009253:2139379:214653921465392146901363Desulfotomaculum reducens MI-1 chromosome, complete genomeribosome-binding factor A2e-2097.8
NC_011999:936500:946062946062946406345Macrococcus caseolyticus JCSC5402, complete genomeribosome-binding factor A6e-2095.9
NC_014909:86000:120346120346120714369Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeribosome-binding factor A1e-1994.7
NC_013216:3376186:338631833863183386677360Desulfotomaculum acetoxidans DSM 771, complete genomeribosome-binding factor A3e-1993.6
NC_019970:1343670:135106213510621351421360Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeribosome-binding factor A4e-1993.2
NC_010001:3369500:337667333766733377083411Clostridium phytofermentans ISDg, complete genomeribosome-binding factor A8e-1992
NC_015696:517941:546773546773547204432Francisella sp. TX077308 chromosome, complete genomeribosome-binding factor A9e-1992
NC_011898:513835:526895526895527248354Clostridium cellulolyticum H10, complete genomeribosome-binding factor A2e-1890.9
NC_008262:1835613:185091218509121851262351Clostridium perfringens SM101, complete genomeribosome-binding factor A4e-1890.1
NC_017259:388000:397892397892398251360Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,ribosome-binding factor A9e-1889
NC_010516:2511035:253632225363222536684363Clostridium botulinum B1 str. Okra, complete genomeribosome-binding factor A2e-1788.2
NC_014098:1553900:155354415535441553903360Bacillus tusciae DSM 2912 chromosome, complete genomeribosome-binding factor A2e-1787.8
NC_020075:114790:128230128230128589360Candidatus Blochmannia chromaiodes str. 640, complete genomeribosome-binding factor A2e-1787.8
NC_010520:2585014:261085326108532611215363Clostridium botulinum A3 str. Loch Maree, complete genomeribosome-binding factor A2e-1787.4
NC_010336:996661:102532410253241025755432Francisella philomiragia subsp. philomiragia ATCC 25017, completeribosome-binding factor A2e-1787.4
NC_008601:1733940:177265817726581773089432Francisella tularensis subsp. novicida U112, complete genomeribosome-binding factor A3e-1787.4
NC_012658:2584355:260629526062952606657363Clostridium botulinum Ba4 str. 657 chromosome, complete genomeribosome-binding factor A3e-1787
NC_020134:1173000:118242711824271182777351Clostridium stercorarium subsp. stercorarium DSM 8532, completeribosome-binding factor A3e-1787
NC_012563:2721658:272261027226102722972363Clostridium botulinum A2 str. Kyoto, complete genomeribosome-binding factor A3e-1787
NC_009495:2524000:254809925480992548461363Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeribosome-binding factor A3e-1787
NC_009697:2394826:242012224201222420484363Clostridium botulinum A str. ATCC 19397 chromosome, completeribosome-binding factor A3e-1787
NC_009698:2367171:239246723924672392829363Clostridium botulinum A str. Hall chromosome, complete genomeribosome-binding factor A3e-1787
NC_008245:24652:532595325953690432Francisella tularensis subsp. tularensis FSC 198, complete genomeRibosome-binding factor A4e-1786.7
NC_010677:96470:125092125092125523432Francisella tularensis subsp. mediasiatica FSC147, complete genomeribosome-binding factor A4e-1786.7
NC_009749:1699152:173705617370561737487432Francisella tularensis subsp. holarctica FTA, complete genomeribosome-binding factor A4e-1786.7
NC_008369:1702885:174078917407891741220432Francisella tularensis subsp. holarctica OSU18, complete genomeribosome-binding factor A4e-1786.7
NC_007880:1703346:174115917411591741590432Francisella tularensis subsp. holarctica, complete genomeRibosome-binding factor A4e-1786.7
NC_006570:24636:532435324353674432Francisella tularensis subsp. tularensis Schu 4, complete genomeRibosome-binding factor A4e-1786.7
NC_009257:109528:138144138144138575432Francisella tularensis subsp. tularensis WY96-3418 chromosome,ribosome-binding factor A4e-1786.7
NC_016933:24654:532615326153692432Francisella tularensis TIGB03 chromosome, complete genomeRibosome-binding factor A4e-1786.7
NC_016937:24654:532615326153692432Francisella tularensis subsp. tularensis TI0902 chromosome,ribosome-binding factor A4e-1786.7
NC_014376:3214222:322095932209593221321363Clostridium saccharolyticum WM1 chromosome, complete genomeribosome-binding factor A7e-1785.9
NC_013315:1370000:138083213808321381212381Clostridium difficile CD196 chromosome, complete genomeribosome-binding factor A1e-1685.1
NC_017179:1378875:139060613906061390986381Clostridium difficile BI1, complete genomeribosome-binding factor A1e-1685.1
NC_020291:1464500:147258414725841472934351Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeribosome-binding factor A1e-1582
NC_014657:944000:958401958401958802402Caldicellulosiruptor owensensis OL chromosome, complete genomeribosome-binding factor a1e-1582
NC_014328:1405484:141450314145031414868366Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeribosome-binding factor A1e-1581.6
NC_009483:2201986:220643722064372206805369Geobacter uraniireducens Rf4 chromosome, complete genomeribosome-binding factor A2e-1581.3
NC_009465:29735:583015830158645345Candidatus Vesicomyosocius okutanii HA, complete genomeribosome-binding factor A2e-1477.4
NC_011295:847903:849080849080849493414Coprothermobacter proteolyticus DSM 5265, complete genomeribosome-binding factor A4e-1476.6
NC_014218:696409:699758699758700246489Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeribosome-binding factor A5e-1476.3
NC_014387:1175927:118944811894481189876429Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeribosome-binding factor A RbfA6e-1476.3
NC_013939:1535071:154394815439481544295348Deferribacter desulfuricans SSM1, complete genomeribosome-binding factor A6e-1476.3
NC_010741:949732:968837968837969217381Treponema pallidum subsp. pallidum SS14, complete genomeribosome-binding factor A9e-1475.5
NC_000919:948287:967392967392967772381Treponema pallidum subsp. pallidum str. Nichols, complete genomeribosome-binding factor A (rbfA)9e-1475.5
NC_016844:950231:969336969336969716381Treponema pallidum subsp. pallidum DAL-1 chromosome, completeribosome-binding factor A9e-1475.5
NC_017268:949543:968648968648969028381Treponema pallidum subsp. pallidum str. Chicago chromosome,ribosome-binding factor A9e-1475.5
NC_021508:949769:968874968874969254381Treponema pallidum subsp. pallidum SS14, complete genomeribosome-binding factor A9e-1475.5
NC_004545:392685:396349396349396723375Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomeribosome-binding factor A2e-1374.7
NC_013943:1381000:139257613925761392908333Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeribosome-binding factor A2e-1374.7
NC_019435:747162:768930768930769289360Lactococcus lactis subsp. cremoris UC509.9, complete genomeribosome-binding factor A2e-1270.9
NC_008527:740060:761825761825762184360Lactococcus lactis subsp. cremoris SK11, complete genomeRibosome-binding factor A2e-1270.9
NC_015672:1566565:157549715754971575859363Flexistipes sinusarabici DSM 4947 chromosome, complete genomeribosome-binding factor A3e-1270.5
NC_009009:1876367:189090518909051891255351Streptococcus sanguinis SK36, complete genomeRibosome-binding factor A, putative7e-1269.3
NC_014727:1292213:131076513107651311127363Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,ribosome-binding factor a9e-1268.9
NC_008054:1117703:113319111331911133553363Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeRibosome-binding factor A9e-1268.9
NC_011244:863306:871126871126871515390Borrelia recurrentis A1, complete genomeribosome-binding factor A3e-1167.4
NC_015318:706374:718307718307718708402Hippea maritima DSM 10411 chromosome, complete genomeRibosome-binding factor A3e-1167
NC_021175:1597613:161702316170231617373351Streptococcus oligofermentans AS 1.3089, complete genomeribosome-binding factor A5e-1166.6
NC_011728:832073:843138843138843500363Borrelia burgdorferi ZS7, complete genomeribosome-binding factor A5e-1166.2
NC_013170:917177:918174918174918530357Cryptobacterium curtum DSM 15641, complete genomeribosome-binding factor A2e-1064.3
NC_015164:2859000:286559528655952865930336Bacteroides salanitronis DSM 18170 chromosome, complete genomeribosome-binding factor A5e-0959.7
NS_000191:344000:355932355932356297366Uncultured Termite group 1 bacterium phylotype Rs-D17, completeribosome-binding factor A5e-0959.7
NC_020419:344000:355932355932356297366Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completeribosome-binding factor A5e-0959.7
NC_005823:3280000:328971032897103290063354Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130ribosomal-binding factor A3e-0857.4
NC_004342:929033:939740939740940093354Leptospira interrogans serovar Lai str. 56601 chromosome I,ribosome binding factor A3e-0857
NC_015064:3370840:338619033861903386618429Acidobacterium sp. MP5ACTX9 chromosome, complete genomeribosome-binding factor A3e-0857
NC_014758:1349494:135580813558081356158351Calditerrivibrio nitroreducens DSM 19672 chromosome, completeribosome-binding factor a2e-0754.3
NC_015144:2053969:207601220760122076371360Weeksella virosa DSM 16922 chromosome, complete genomeribosome-binding factor A6e-0752.8
NC_013947:1537275:153727515372751537712438Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeribosome-binding factor A3e-0650.8
NC_013517:2437574:245028124502812450643363Sebaldella termitidis ATCC 33386, complete genomeribosome-binding factor A3e-0650.4
NC_008025:1799106:180207818020781802368291Deinococcus geothermalis DSM 11300, complete genomeribosome-binding factor A5e-0650.1